Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   V3C22_RS03115 Genome accession   NZ_CP183775
Coordinates   638942..639880 (+) Length   312 a.a.
NCBI ID   WP_002275542.1    Uniprot ID   -
Organism   Streptococcus mutans strain Xc     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 633942..644880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3C22_RS03090 (V3C22_03090) - 634060..634560 (+) 501 WP_226708905.1 GNAT family N-acetyltransferase -
  V3C22_RS03095 (V3C22_03095) - 634650..636023 (-) 1374 WP_151416208.1 PLP-dependent aminotransferase family protein -
  V3C22_RS03100 (V3C22_03100) - 636151..637118 (+) 968 Protein_575 alcohol dehydrogenase catalytic domain-containing protein -
  V3C22_RS03105 (V3C22_03105) - 637363..637636 (+) 274 Protein_576 hypothetical protein -
  V3C22_RS03110 (V3C22_03110) - 637742..638635 (+) 894 WP_226706818.1 alpha/beta hydrolase fold domain-containing protein -
  V3C22_RS03115 (V3C22_03115) coiA 638942..639880 (+) 939 WP_002275542.1 competence protein CoiA Machinery gene
  V3C22_RS03120 (V3C22_03120) pepF 639902..641701 (+) 1800 WP_226706817.1 oligoendopeptidase F Regulator
  V3C22_RS03125 (V3C22_03125) - 641918..642535 (+) 618 WP_002283196.1 HAD-IA family hydrolase -
  V3C22_RS03130 (V3C22_03130) - 642585..643292 (+) 708 WP_002273046.1 O-methyltransferase -
  V3C22_RS03135 (V3C22_03135) prsA 643354..644355 (+) 1002 WP_002284840.1 peptidylprolyl isomerase PrsA -

Sequence


Protein


Download         Length: 312 a.a.        Molecular weight: 36694.02 Da        Isoelectric Point: 8.7637

>NTDB_id=983246 V3C22_RS03115 WP_002275542.1 638942..639880(+) (coiA) [Streptococcus mutans strain Xc]
MLAARDKNGKLINLLNGIPDKSDFYCPACQSPVRLKNGRVMRPHFAHVALQDCKFYSENESAEHLNLKAELYQSLSQTES
VEIEKVIPEPEQIADLLVNHNLALEVQCSRLSEARLCERTQAYQVNGYQVLWLLGEKLWLDRRLSSLHKQFLYFSQNMGF
HLWELDINRRELRLKYLIYEDIFGKVYYQTRSCSFDGNIMTFLQLPYAKQTLTSYPVHQRRQVGLAIQKQLLARNPRWLR
QQELAYSQGRNLIAQSDADFFPQVRLPQCSRGFCQINQDVSHFSAAFFQYYQKQKDKEIQTLYPPAFYDKMK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=983246 V3C22_RS03115 WP_002275542.1 638942..639880(+) (coiA) [Streptococcus mutans strain Xc]
ATGTTAGCTGCAAGGGATAAAAATGGAAAGTTGATTAATCTTCTGAATGGTATTCCTGACAAAAGTGATTTTTATTGTCC
TGCCTGCCAATCGCCTGTACGTCTCAAAAACGGCAGGGTTATGCGTCCGCATTTTGCCCATGTTGCTTTGCAAGACTGCA
AATTTTACAGTGAAAATGAGTCCGCTGAACACCTAAACTTGAAAGCAGAACTCTATCAGTCATTATCTCAGACGGAAAGT
GTTGAGATCGAAAAAGTCATACCAGAACCTGAACAAATCGCAGACTTATTAGTTAATCATAACCTAGCATTAGAAGTTCA
GTGTTCTCGCTTGTCCGAAGCTCGTCTGTGTGAACGAACGCAGGCCTATCAGGTCAATGGTTATCAGGTACTGTGGCTGC
TTGGGGAGAAACTCTGGTTGGATAGGCGTTTATCCAGCTTGCACAAACAATTTCTTTACTTTTCACAAAATATGGGCTTT
CATCTTTGGGAATTAGATATTAATAGGCGTGAGTTGCGACTTAAGTACTTGATTTATGAAGATATTTTTGGCAAAGTCTA
TTATCAAACGAGGTCTTGTTCTTTTGATGGTAATATCATGACCTTTTTACAATTGCCCTATGCTAAGCAAACCTTGACTT
CTTATCCTGTTCACCAGCGCAGGCAGGTTGGTTTAGCCATTCAAAAACAACTGCTAGCACGCAATCCGCGTTGGCTGCGT
CAGCAAGAACTTGCTTATTCACAGGGGCGTAATCTGATAGCACAATCAGATGCTGATTTTTTCCCGCAGGTAAGGTTACC
GCAATGTTCAAGAGGCTTTTGTCAAATCAATCAGGATGTATCTCATTTTAGCGCAGCTTTTTTTCAATATTATCAAAAGC
AAAAAGACAAAGAAATTCAAACACTGTATCCGCCAGCCTTTTATGATAAAATGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

46.926

99.038

0.465

  coiA Streptococcus pneumoniae Rx1

45.955

99.038

0.455

  coiA Streptococcus pneumoniae D39

45.955

99.038

0.455

  coiA Streptococcus pneumoniae R6

45.955

99.038

0.455

  coiA Streptococcus pneumoniae TIGR4

45.631

99.038

0.452

  coiA Lactococcus lactis subsp. cremoris KW2

39.385

100

0.41


Multiple sequence alignment