Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACN3VN_RS08565 Genome accession   NZ_CP183396
Coordinates   1848921..1849547 (-) Length   208 a.a.
NCBI ID   WP_058569219.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CFBP8074     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1843921..1854547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN3VN_RS08550 (ACN3VN_08550) - 1844384..1844668 (-) 285 WP_046419069.1 HU family DNA-binding protein -
  ACN3VN_RS08555 (ACN3VN_08555) lon 1844889..1847360 (-) 2472 WP_046419066.1 endopeptidase La -
  ACN3VN_RS08560 (ACN3VN_08560) clpX 1847513..1848793 (-) 1281 WP_010893699.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACN3VN_RS08565 (ACN3VN_08565) clpP 1848921..1849547 (-) 627 WP_058569219.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACN3VN_RS08570 (ACN3VN_08570) tig 1849682..1850992 (-) 1311 WP_058569220.1 trigger factor -
  ACN3VN_RS08580 (ACN3VN_08580) - 1852901..1853362 (+) 462 WP_004086550.1 hypothetical protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22720.00 Da        Isoelectric Point: 4.8632

>NTDB_id=983192 ACN3VN_RS08565 WP_058569219.1 1848921..1849547(-) (clpP) [Xylella fastidiosa strain CFBP8074]
MDDVTKALNLVPMVVEQTSRGERAYDIYSRLLKERLIFLVGSIDDYMANLIVAQLLFLEAENPEKDINIYINSPGGVVTA
GMAIYDTMQYIKPAVSTICVGQAASMGALLLASGASGKRYALPNSRVMIHQPLGGFQGQATDIDIHAREILALRARLNEI
LAKHTGQSLETIAHDTERDNFKSAVDAQAYGLVDQVLGQRPEELIQSS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=983192 ACN3VN_RS08565 WP_058569219.1 1848921..1849547(-) (clpP) [Xylella fastidiosa strain CFBP8074]
GTGGATGATGTGACAAAAGCTTTAAATCTAGTGCCGATGGTGGTCGAACAGACTAGCCGGGGGGAGCGTGCTTACGACAT
ATATTCGCGTTTATTAAAGGAACGGCTCATCTTTCTGGTTGGCTCTATTGACGACTACATGGCCAATTTAATAGTGGCGC
AACTCCTTTTCTTGGAAGCGGAAAATCCCGAGAAGGACATTAATATTTACATTAATTCTCCGGGTGGTGTGGTTACTGCA
GGTATGGCCATTTACGACACGATGCAGTACATTAAACCTGCTGTCAGTACTATCTGTGTTGGTCAAGCTGCTTCTATGGG
GGCGTTGTTGCTGGCTTCAGGTGCGTCTGGTAAGCGTTATGCTTTGCCGAACTCGCGTGTGATGATCCATCAACCGTTAG
GTGGTTTCCAGGGCCAAGCTACTGACATCGACATCCATGCACGTGAGATACTTGCTTTACGTGCGCGTCTAAACGAAATA
TTGGCTAAGCATACGGGACAGTCCTTGGAGACTATTGCTCATGACACTGAGCGTGATAACTTTAAAAGTGCTGTTGATGC
CCAAGCTTATGGTTTGGTAGATCAGGTCCTTGGGCAGCGCCCGGAAGAGTTGATTCAGTCTTCTTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

70.526

91.346

0.644
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.085

90.385

0.615
  clpP Lactococcus lactis subsp. cremoris KW2

54.737

91.346

0.5
  clpP Streptococcus thermophilus LMG 18311

53.158

91.346

0.486
  clpP Streptococcus thermophilus LMD-9

53.158

91.346

0.486
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.158

91.346

0.486
  clpP Streptococcus pneumoniae TIGR4

52.604

92.308

0.486
  clpP Streptococcus pneumoniae Rx1

52.604

92.308

0.486
  clpP Streptococcus pneumoniae D39

52.604

92.308

0.486
  clpP Streptococcus pneumoniae R6

52.604

92.308

0.486
  clpP Streptococcus pyogenes MGAS315

52.105

91.346

0.476
  clpP Streptococcus pyogenes JRS4

52.105

91.346

0.476
  clpP Streptococcus mutans UA159

49.239

94.712

0.466

Multiple sequence alignment