Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NSS96_RS11380 | Genome accession | NZ_CP151980 |
| Coordinates | 2226263..2226598 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus sp. FSL W7-1336 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2221263..2231598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NSS96_RS11360 (NSS96_11360) | gcvT | 2221740..2222837 (-) | 1098 | WP_101676874.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NSS96_RS11365 (NSS96_11365) | - | 2223399..2225069 (+) | 1671 | WP_034280230.1 | SNF2-related protein | - |
| NSS96_RS11370 (NSS96_11370) | - | 2225084..2225881 (+) | 798 | WP_034280228.1 | YqhG family protein | - |
| NSS96_RS11375 (NSS96_11375) | - | 2226065..2226229 (+) | 165 | WP_075623492.1 | anti-repressor SinI family protein | - |
| NSS96_RS11380 (NSS96_11380) | sinR | 2226263..2226598 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| NSS96_RS11385 (NSS96_11385) | - | 2226666..2227466 (-) | 801 | WP_034280222.1 | TasA family protein | - |
| NSS96_RS11390 (NSS96_11390) | - | 2227524..2228096 (-) | 573 | WP_034280218.1 | signal peptidase I | - |
| NSS96_RS11395 (NSS96_11395) | tapA | 2228149..2228676 (-) | 528 | WP_041117967.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NSS96_RS11400 (NSS96_11400) | - | 2228976..2229254 (+) | 279 | WP_061109527.1 | DUF3889 domain-containing protein | - |
| NSS96_RS11405 (NSS96_11405) | - | 2229289..2229483 (-) | 195 | WP_024422974.1 | YqzE family protein | - |
| NSS96_RS11410 (NSS96_11410) | comGG | 2229543..2229926 (-) | 384 | WP_041117969.1 | competence type IV pilus minor pilin ComGG | - |
| NSS96_RS11415 (NSS96_11415) | comGF | 2229923..2230450 (-) | 528 | WP_268480849.1 | competence type IV pilus minor pilin ComGF | - |
| NSS96_RS11420 (NSS96_11420) | comGE | 2230362..2230676 (-) | 315 | WP_305933702.1 | competence type IV pilus minor pilin ComGE | - |
| NSS96_RS11425 (NSS96_11425) | comGD | 2230660..2231106 (-) | 447 | WP_041117975.1 | competence type IV pilus minor pilin ComGD | - |
| NSS96_RS11430 (NSS96_11430) | comGC | 2231099..2231392 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=983191 NSS96_RS11380 WP_024422969.1 2226263..2226598(+) (sinR) [Bacillus sp. FSL W7-1336]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=983191 NSS96_RS11380 WP_024422969.1 2226263..2226598(+) (sinR) [Bacillus sp. FSL W7-1336]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |