Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACN20J_RS17935 Genome accession   NZ_CP183383
Coordinates   4075948..4076628 (-) Length   226 a.a.
NCBI ID   WP_189837851.1    Uniprot ID   -
Organism   Streptomyces sp. 2-1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4070948..4081628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN20J_RS17920 (ACN20J_17915) tnpA 4072335..4072937 (+) 603 WP_362001658.1 IS200/IS605 family transposase -
  ACN20J_RS17925 (ACN20J_17920) - 4073024..4073959 (+) 936 WP_419666293.1 hypothetical protein -
  ACN20J_RS17930 (ACN20J_17925) clpX 4074501..4075787 (-) 1287 WP_143632143.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACN20J_RS17935 (ACN20J_17930) clpP 4075948..4076628 (-) 681 WP_189837851.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACN20J_RS17940 (ACN20J_17935) clpP 4076731..4077336 (-) 606 WP_189838477.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACN20J_RS17945 (ACN20J_17940) tig 4077844..4079244 (-) 1401 WP_419666294.1 trigger factor -
  ACN20J_RS17960 (ACN20J_17955) - 4079852..4080691 (-) 840 WP_419666295.1 alpha/beta fold hydrolase -
  ACN20J_RS17965 (ACN20J_17960) - 4080986..4081180 (-) 195 WP_055611884.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24968.36 Da        Isoelectric Point: 4.5102

>NTDB_id=983077 ACN20J_RS17935 WP_189837851.1 4075948..4076628(-) (clpP) [Streptomyces sp. 2-1]
MNDFPGSGLYARTEAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALEYGLIDQIISTRKMNNAAVA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=983077 ACN20J_RS17935 WP_189837851.1 4075948..4076628(-) (clpP) [Streptomyces sp. 2-1]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACAGAGGCCGAGTACACCGGCCCTCGCGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTCCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCACTCACTGCGATTTACGACACGATGCAGTT
CGTGAAGCCGGACGTCCAGACGGTCTGCATGGGCCAGGCGGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCACTTCCCAACGCCCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGAGGCCAGGTCTCGGAC
CTCGAAATCGCGGCGAACGAGATCCTCCGCATGCGCGCCCAGCTGGAAGACATGCTGGCCAAGCACTCGACGACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGAGTACGGCCTGATCGACCAGA
TCATCTCGACCCGGAAGATGAACAACGCCGCGGTCGCGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

53.158

84.071

0.447
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.064

83.186

0.425
  clpP Streptococcus thermophilus LMG 18311

47.179

86.283

0.407
  clpP Streptococcus thermophilus LMD-9

47.179

86.283

0.407
  clpP Streptococcus mutans UA159

45.729

88.053

0.403
  clpP Streptococcus pneumoniae D39

45.408

86.726

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

45.408

86.726

0.394
  clpP Streptococcus pneumoniae Rx1

45.408

86.726

0.394
  clpP Streptococcus pneumoniae R6

45.408

86.726

0.394
  clpP Streptococcus pneumoniae TIGR4

45.408

86.726

0.394
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.388

86.726

0.385