Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSQ17_RS08610 Genome accession   NZ_CP151975
Coordinates   1694629..1695879 (+) Length   416 a.a.
NCBI ID   WP_081114823.1    Uniprot ID   -
Organism   Bacillus sp. FSL W8-0629     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1689629..1700879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ17_RS08585 (NSQ17_08585) - 1691039..1691767 (+) 729 WP_217967194.1 SDR family oxidoreductase -
  NSQ17_RS08590 (NSQ17_08590) - 1691840..1692097 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  NSQ17_RS08595 (NSQ17_08595) - 1692229..1693020 (+) 792 WP_039166619.1 DUF3388 domain-containing protein -
  NSQ17_RS08600 (NSQ17_08600) - 1693044..1693955 (+) 912 WP_039166616.1 helix-turn-helix domain-containing protein -
  NSQ17_RS08605 (NSQ17_08605) pgsA 1694031..1694612 (+) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ17_RS08610 (NSQ17_08610) cinA 1694629..1695879 (+) 1251 WP_081114823.1 competence/damage-inducible protein A Machinery gene
  NSQ17_RS08615 (NSQ17_08615) recA 1696057..1697100 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  NSQ17_RS08620 (NSQ17_08620) rny 1697401..1698963 (+) 1563 WP_003211958.1 ribonuclease Y -
  NSQ17_RS08625 (NSQ17_08625) - 1699053..1699847 (+) 795 WP_019744184.1 TIGR00282 family metallophosphoesterase -
  NSQ17_RS08630 (NSQ17_08630) spoVS 1700050..1700310 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45627.77 Da        Isoelectric Point: 4.9223

>NTDB_id=982906 NSQ17_RS08610 WP_081114823.1 1694629..1695879(+) (cinA) [Bacillus sp. FSL W8-0629]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGNTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=982906 NSQ17_RS08610 WP_081114823.1 1694629..1695879(+) (cinA) [Bacillus sp. FSL W8-0629]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGACGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGTGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTAATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCGTTAGAGCTCGCCGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGACCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus mitis SK321

47.847

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.608

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.368

100

0.476
  cinA Streptococcus pneumoniae R6

47.368

100

0.476
  cinA Streptococcus pneumoniae D39

47.129

100

0.474
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment