Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NST83_RS10445 Genome accession   NZ_CP151951
Coordinates   2233548..2234819 (+) Length   423 a.a.
NCBI ID   WP_342417520.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R10-2782     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2228548..2239819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST83_RS10415 (NST83_10415) - 2229356..2229610 (+) 255 WP_014281144.1 DUF3243 domain-containing protein -
  NST83_RS10420 (NST83_10420) - 2229850..2230623 (+) 774 WP_235332175.1 DUF3388 domain-containing protein -
  NST83_RS10425 (NST83_10425) - 2230654..2231769 (+) 1116 WP_342417518.1 RodZ domain-containing protein -
  NST83_RS10430 (NST83_10430) - 2231854..2232018 (+) 165 WP_170970830.1 hypothetical protein -
  NST83_RS10435 (NST83_10435) - 2232163..2232654 (+) 492 WP_342417519.1 YajQ family cyclic di-GMP-binding protein -
  NST83_RS10440 (NST83_10440) pgsA 2232864..2233451 (+) 588 WP_137062774.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST83_RS10445 (NST83_10445) cinA 2233548..2234819 (+) 1272 WP_342417520.1 competence/damage-inducible protein A Machinery gene
  NST83_RS10450 (NST83_10450) recA 2235063..2236124 (+) 1062 WP_137062776.1 recombinase RecA Machinery gene
  NST83_RS10455 (NST83_10455) - 2236320..2237069 (+) 750 WP_342417521.1 RecX family transcriptional regulator -
  NST83_RS10460 (NST83_10460) rny 2237446..2238990 (+) 1545 WP_014281153.1 ribonuclease Y -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46279.92 Da        Isoelectric Point: 4.6792

>NTDB_id=981866 NST83_RS10445 WP_342417520.1 2233548..2234819(+) (cinA) [Paenibacillus sp. FSL R10-2782]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNMDRLQEAVRLAQKRADIILFSGGLGPTQDDLTKDA
IAAVLGRKLHIDRLAMDKLEQFFRNRGVEMTENNRRQALSIEGATPLGNETGLAVGDAIAQNGKYYVVLPGPPKELKPMF
ENQAKPWLLQQALSGEELPIYSKMLKFAGIGESALETRLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALVKLGA
TEAEIQQRLSEYMYASEDVPLEKVIVDLMSDRGLTVSAAESCTGGMLMEHITSVPGSAAMFQGGIVCYSNEMKKKLLNVP
HDYLEGDNAPGAVSEEVALVLAEQARMVTDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVYELKLSGNRETIR
LRSVKAILYRLWRRLAENEQHSL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=981866 NST83_RS10445 WP_342417520.1 2233548..2234819(+) (cinA) [Paenibacillus sp. FSL R10-2782]
ATGAAAGCTGAAATCATCGCAGTAGGAACTGAATTATTGCTCGGACAAATTGTGAATACGAATGCCCAATATTTGTCACA
AGAGTTGGCTACGATTGGGATTGATGTATATTTTCAGACGGTTGTTGGCGATAACATGGATCGGCTTCAGGAAGCGGTGC
GTCTGGCTCAGAAGCGTGCGGATATTATTTTGTTCTCGGGCGGTTTGGGACCGACTCAGGATGATTTGACGAAAGATGCA
ATCGCCGCTGTGCTGGGGCGTAAATTGCATATAGACCGTCTCGCTATGGATAAGCTGGAACAGTTTTTCCGTAATCGCGG
GGTAGAAATGACCGAAAATAATCGGCGTCAAGCGCTTTCCATTGAAGGGGCTACCCCGCTTGGAAATGAGACAGGTCTGG
CTGTGGGCGATGCGATTGCACAGAATGGTAAATATTATGTGGTTTTGCCTGGACCGCCGAAGGAACTCAAGCCGATGTTT
GAGAATCAGGCAAAACCTTGGTTGCTCCAGCAAGCACTGAGCGGTGAGGAGCTGCCGATTTATTCAAAAATGCTAAAGTT
TGCAGGAATCGGTGAGTCAGCTCTCGAAACCCGCTTATTGGATCTGATCCAATCACAGACAGACCCGACGATTGCTCCTT
ATGCCAAGGAGGGAGAGGTCACAATCCGTATATCCACCAAGGCGGCCAGCGAGAGCGAGGCACTGGTCAAGCTTGGGGCT
ACGGAAGCAGAAATTCAACAGCGTCTTTCGGAATACATGTATGCGAGCGAGGATGTCCCGCTGGAGAAGGTTATTGTGGA
TTTGATGTCCGATCGCGGACTGACTGTTAGCGCGGCGGAAAGCTGCACAGGTGGAATGCTAATGGAGCATATCACTTCTG
TCCCGGGTAGTGCAGCTATGTTTCAGGGAGGTATCGTGTGTTATTCCAATGAAATGAAGAAGAAGCTGCTCAACGTGCCA
CATGATTATCTGGAGGGGGACAATGCGCCCGGCGCAGTAAGCGAGGAGGTAGCTCTTGTACTTGCGGAGCAGGCAAGAAT
GGTCACGGACAGTGATTTTGGGCTCTCGGTTACTGGTGTAGCTGGGCCAGGATATTCTGAGCGGAAGCCGGTTGGTCTGG
TTTATATCGGTATTGCTGAGCGCGACAAAGAAACTGAGGTATACGAGCTGAAACTGAGCGGGAATCGTGAAACGATCCGC
CTGCGGTCTGTTAAGGCAATCCTGTACAGATTATGGCGCAGACTGGCGGAAAATGAGCAGCACTCTTTATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

96.927

0.485
  cinA Streptococcus mitis NCTC 12261

49.756

96.927

0.482
  cinA Streptococcus pneumoniae TIGR4

49.756

96.927

0.482
  cinA Streptococcus pneumoniae Rx1

49.512

96.927

0.48
  cinA Streptococcus pneumoniae R6

49.512

96.927

0.48
  cinA Streptococcus pneumoniae D39

49.268

96.927

0.478
  cinA Bacillus subtilis subsp. subtilis str. 168

49.01

95.508

0.468
  cinA Streptococcus mutans UA159

46.814

96.454

0.452
  cinA Streptococcus suis isolate S10

44.386

90.544

0.402

Multiple sequence alignment