Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSQ68_RS10455 Genome accession   NZ_CP151949
Coordinates   2261053..2262321 (+) Length   422 a.a.
NCBI ID   WP_342428774.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0158     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2256053..2267321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ68_RS10425 (NSQ68_10425) - 2256900..2257154 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  NSQ68_RS10430 (NSQ68_10430) - 2257382..2258155 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  NSQ68_RS10435 (NSQ68_10435) - 2258186..2259274 (+) 1089 WP_342428773.1 RodZ domain-containing protein -
  NSQ68_RS10440 (NSQ68_10440) - 2259359..2259523 (+) 165 WP_023988236.1 hypothetical protein -
  NSQ68_RS10445 (NSQ68_10445) - 2259668..2260159 (+) 492 WP_013309953.1 YajQ family cyclic di-GMP-binding protein -
  NSQ68_RS10450 (NSQ68_10450) pgsA 2260370..2260957 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSQ68_RS10455 (NSQ68_10455) cinA 2261053..2262321 (+) 1269 WP_342428774.1 competence/damage-inducible protein A Machinery gene
  NSQ68_RS10460 (NSQ68_10460) recA 2262564..2263625 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  NSQ68_RS10465 (NSQ68_10465) - 2263821..2264570 (+) 750 WP_342428775.1 RecX family transcriptional regulator -
  NSQ68_RS10470 (NSQ68_10470) rny 2264945..2266489 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46406.37 Da        Isoelectric Point: 4.7675

>NTDB_id=981836 NSQ68_RS10455 WP_342428774.1 2261053..2262321(+) (cinA) [Paenibacillus sp. FSL L8-0158]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNINRLQEAIRIAQKRADIILFSGGLGPTQDDLTKEA
IAAVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANQAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETRLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEFMYASEDVTLEKVIVDLMANRGFTVSAAESCTGGMLMEHITSIPGSATMFQGGIVCYSNEMKMKLLNVP
YDYLEGDQAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=981836 NSQ68_RS10455 WP_342428774.1 2261053..2262321(+) (cinA) [Paenibacillus sp. FSL L8-0158]
ATGAAAGCTGAAATAATTGCGGTAGGAACAGAGTTATTGCTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGCTGGCTACAATCGGAATCGATGTATATTTCCAGACTGTGGTTGGCGATAACATAAATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGGCCGACTCAGGATGATTTGACGAAAGAGGCG
ATAGCGGCTGTATTGGGGCGGAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAATTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGTGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCAATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCTCCTAAGGAACTCAAACCGATGTTT
GCAAACCAGGCCAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCAAAAATGCTAAAATT
TGCAGGGATTGGTGAGTCAGCTCTTGAAACCCGTTTGTTAGATCTGATCCAATCCCAGACAGATCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTGATTAAGCTGACGGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAATTTATGTATGCAAGCGAAGATGTTACGTTGGAGAAGGTTATCGTAGA
TCTAATGGCCAATCGCGGATTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTACTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAATTACTCAATGTGCCT
TATGATTATTTGGAAGGGGATCAAGCGCCAGGTGCAGTGAGTAAGGAAGTGGCCCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGACAGCGATTTTGGACTTTCAGTTACTGGTGTAGCCGGGCCTGGGTATTCCGAACGGAAGCCAGTCGGACTAG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGTAACCGCGAAACAATCCGA
CTGCGATCAGTCAAAGCGATTCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus pneumoniae TIGR4

50

97.156

0.486
  cinA Streptococcus mitis NCTC 12261

49.756

97.156

0.483
  cinA Streptococcus pneumoniae Rx1

49.756

97.156

0.483
  cinA Streptococcus pneumoniae R6

49.756

97.156

0.483
  cinA Streptococcus pneumoniae D39

49.512

97.156

0.481
  cinA Bacillus subtilis subsp. subtilis str. 168

48.309

98.104

0.474
  cinA Streptococcus mutans UA159

45.647

100

0.46
  cinA Streptococcus suis isolate S10

44.819

91.469

0.41

Multiple sequence alignment