Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MHI21_RS10895 Genome accession   NZ_CP151948
Coordinates   2307421..2308689 (+) Length   422 a.a.
NCBI ID   WP_250261587.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H8-0168     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2302421..2313689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI21_RS10865 (MHI21_10865) - 2303280..2303534 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  MHI21_RS10870 (MHI21_10870) - 2303762..2304535 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  MHI21_RS10875 (MHI21_10875) - 2304566..2305642 (+) 1077 WP_342419985.1 RodZ family helix-turn-helix domain-containing protein -
  MHI21_RS10880 (MHI21_10880) - 2305727..2305891 (+) 165 WP_023988236.1 hypothetical protein -
  MHI21_RS10885 (MHI21_10885) - 2306036..2306527 (+) 492 WP_013309953.1 YajQ family cyclic di-GMP-binding protein -
  MHI21_RS10890 (MHI21_10890) pgsA 2306738..2307325 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MHI21_RS10895 (MHI21_10895) cinA 2307421..2308689 (+) 1269 WP_250261587.1 competence/damage-inducible protein A Machinery gene
  MHI21_RS10900 (MHI21_10900) recA 2308932..2309993 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  MHI21_RS10905 (MHI21_10905) - 2310189..2310938 (+) 750 WP_061829419.1 RecX family transcriptional regulator -
  MHI21_RS10910 (MHI21_10910) rny 2311313..2312857 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46405.38 Da        Isoelectric Point: 4.7819

>NTDB_id=981805 MHI21_RS10895 WP_250261587.1 2307421..2308689(+) (cinA) [Paenibacillus sp. FSL H8-0168]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKEA
IAAVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANHAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVALEKVIVDLMAKRELTVSAAESCTGGMLMEQITSIPGSAAMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=981805 MHI21_RS10895 WP_250261587.1 2307421..2308689(+) (cinA) [Paenibacillus sp. FSL H8-0168]
ATGAAAGCTGAAATAATTGCAGTAGGAACAGAGTTATTACTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGCTGGCTACAATTGGAATCGATGTATATTTTCAGACTGTGGTTGGCGATAACATAGATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGGCCGACTCAGGATGATTTGACGAAAGAGGCG
ATAGCGGCTGTATTGGGGCGAAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAATTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGTGCTACTCCACTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCGATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCTAAGGAACTCAAACCCATGTTT
GCAAACCATGCGAAACCTTGGTTGCTTCAGCAAGCATTGAGCGGTGAGGAAATGCCAATTTATTCGAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATTTGATCCAATCCCAGACAGATCCTACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTAATTAAGTTGACAGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAGTATATGTATGCAAGCGAGGATGTTGCGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAACGCGAACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACAGATTACTTCTA
TACCTGGCAGTGCTGCTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAGTTACTCAACGTGCCT
TATGATTATTTGGAAGGGGACCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCACTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGATAGCGATTTTGGACTTTCAGTTACTGGTGTAGCTGGGCCTGGGTATTCCGAACGGAAGCCAGTCGGTCTAG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGCAACCGTGAAACAATCCGA
CTGCGATCAGTTAAAGCAATCCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.756

97.156

0.483
  cinA Streptococcus pneumoniae TIGR4

49.512

97.156

0.481
  cinA Streptococcus mitis NCTC 12261

49.268

97.156

0.479
  cinA Streptococcus pneumoniae Rx1

49.268

97.156

0.479
  cinA Streptococcus pneumoniae R6

49.268

97.156

0.479
  cinA Streptococcus pneumoniae D39

49.024

97.156

0.476
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.735

0.467
  cinA Streptococcus mutans UA159

45.412

100

0.457
  cinA Streptococcus suis isolate S10

44.909

90.758

0.408

Multiple sequence alignment