Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAFX34_RS10970 Genome accession   NZ_CP151937
Coordinates   717256..718482 (-) Length   408 a.a.
NCBI ID   WP_061058909.1    Uniprot ID   -
Organism   Vibrio vulnificus strain TBV029     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 712256..723482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS10930 (AAFX34_10920) rpsP 712412..712660 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  AAFX34_RS10935 (AAFX34_10925) rimM 712676..713224 (+) 549 WP_061058912.1 ribosome maturation factor RimM -
  AAFX34_RS10940 (AAFX34_10930) trmD 713252..714001 (+) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AAFX34_RS10945 (AAFX34_10935) rplS 714043..714396 (+) 354 WP_011079544.1 50S ribosomal protein L19 -
  AAFX34_RS10950 (AAFX34_10940) yacG 714653..714847 (-) 195 WP_026060801.1 DNA gyrase inhibitor YacG -
  AAFX34_RS10955 (AAFX34_10945) zapD 714910..715650 (-) 741 WP_011079546.1 cell division protein ZapD -
  AAFX34_RS10960 (AAFX34_10950) coaE 715683..716291 (-) 609 WP_061058911.1 dephospho-CoA kinase -
  AAFX34_RS10965 (AAFX34_10955) pilD 716293..717162 (-) 870 WP_061058910.1 prepilin peptidase Machinery gene
  AAFX34_RS10970 (AAFX34_10960) pilC 717256..718482 (-) 1227 WP_061058909.1 type II secretion system F family protein Machinery gene
  AAFX34_RS10975 (AAFX34_10965) pilB 718529..720214 (-) 1686 WP_061058908.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAFX34_RS10980 (AAFX34_10970) - 720219..720668 (-) 450 WP_175546417.1 pilin -
  AAFX34_RS10985 (AAFX34_10975) nadC 720891..721778 (-) 888 WP_061058907.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AAFX34_RS10990 (AAFX34_10980) ampD 721871..722443 (+) 573 WP_045622095.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45241.59 Da        Isoelectric Point: 10.3569

>NTDB_id=981321 AAFX34_RS10970 WP_061058909.1 717256..718482(-) (pilC) [Vibrio vulnificus strain TBV029]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVMG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=981321 AAFX34_RS10970 WP_061058909.1 717256..718482(-) (pilC) [Vibrio vulnificus strain TBV029]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCAGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTTACCGAGCTTGAGGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGTAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTCAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCAGGTACGCCGTTATCGAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGTCTCGCTTTTTATCGGGAA
AAAAATGAGCAGTTGCGAGCAAAAGTGATCAAGGCGCTAATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGCGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGTGCTATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCAGTGATTGGAGG
GGTCTTATCCAAAGCGGCGATTGCCAAATTTAGTCGCACATTGGCCACCAGTTTCAGCGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCTTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAGGTGGATAACACCGTCGACAACCTCG
GTAAGATTCTCGAGCCGTTGATCATCGTCTTTCTCGGCGTTGTCGTCGGCGGATTAGTCGCCGCCATGTATTTGCCGATC
TTTAACTTAATGAGTGTTATGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.25

98.039

0.767
  pilC Vibrio campbellii strain DS40M4

74.314

98.284

0.73
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

40

100

0.402
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baylyi ADP1

40.852

97.794

0.4
  pilC Legionella pneumophila strain ERS1305867

40.299

98.529

0.397

Multiple sequence alignment