Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AAGT95_RS18630 Genome accession   NZ_CP151919
Coordinates   4122561..4123814 (+) Length   417 a.a.
NCBI ID   WP_342594756.1    Uniprot ID   -
Organism   Salinicola lusitanus strain LLJ914     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4117561..4128814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGT95_RS18605 (AAGT95_18605) - 4117616..4117768 (+) 153 WP_342594753.1 hypothetical protein -
  AAGT95_RS18610 (AAGT95_18610) - 4117784..4119235 (-) 1452 WP_342594754.1 TrkH family potassium uptake protein -
  AAGT95_RS18615 (AAGT95_18615) - 4119588..4119872 (+) 285 WP_110602865.1 hypothetical protein -
  AAGT95_RS18620 (AAGT95_18620) - 4119934..4120422 (-) 489 WP_342594755.1 pilin -
  AAGT95_RS18625 (AAGT95_18625) pilB 4120792..4122519 (+) 1728 WP_110602867.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AAGT95_RS18630 (AAGT95_18630) pilC 4122561..4123814 (+) 1254 WP_342594756.1 type II secretion system F family protein Machinery gene
  AAGT95_RS18635 (AAGT95_18635) - 4123951..4124811 (+) 861 WP_342594757.1 A24 family peptidase -
  AAGT95_RS18640 (AAGT95_18640) coaE 4124850..4125458 (+) 609 WP_342596548.1 dephospho-CoA kinase -
  AAGT95_RS18645 (AAGT95_18645) yacG 4125513..4125758 (+) 246 WP_110602871.1 DNA gyrase inhibitor YacG -
  AAGT95_RS18650 (AAGT95_18650) - 4125970..4126923 (-) 954 WP_110602384.1 Nudix family hydrolase -
  AAGT95_RS18655 (AAGT95_18655) argJ 4127002..4128210 (-) 1209 WP_342594758.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45980.95 Da        Isoelectric Point: 10.7106

>NTDB_id=981179 AAGT95_RS18630 WP_342594756.1 4122561..4123814(+) (pilC) [Salinicola lusitanus strain LLJ914]
MATTLKSAKTVKAPKAPRRVVMHRWRWRGKNLRGESVAGELIASDIDEVRKELTRQRIIVKRITRKTGMFGLGRIKARDI
TLFSRQLATMIRAGVPLLQGCKVVAETLKNPAMRNLVETLANDISAGSSFSEALAKHPSRFDRMFVNMVAAGEQSGALDK
MLERVASYREKIETLKGRVKKALYYPTAVVLVGIGVTALLLVKVVPQFESLFQGFGAELPAFTQFTVHLSQLTQAYWWQA
ILAATAIFLGLRQAMKRSPTFAYRAHQLVLKLPVLGNIVDKGSIARFSRTLATTFNAGIPLVEALETAAGATGNRVHQRA
IASIREDVGTGQQLNFAMRRTRIFPIMAVQMVSIGEEAGELDTMLDKVAEFYEEEVDNQVDALTSLLEPFILVVLGTMVG
GLVVSMYLPIFQMGSAI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=981179 AAGT95_RS18630 WP_342594756.1 4122561..4123814(+) (pilC) [Salinicola lusitanus strain LLJ914]
ATGGCGACGACCCTCAAGTCAGCCAAGACAGTGAAAGCCCCCAAGGCGCCGCGACGGGTGGTGATGCACCGCTGGCGGTG
GCGCGGCAAGAACCTGCGCGGGGAGAGCGTAGCCGGTGAACTCATTGCCTCCGATATCGACGAGGTCCGCAAGGAGCTGA
CGCGCCAGAGGATCATCGTCAAGCGCATCACCCGCAAGACGGGGATGTTCGGACTGGGGCGAATCAAGGCCCGCGACATC
ACGCTTTTTTCCCGTCAACTGGCGACCATGATCCGGGCCGGCGTGCCGCTACTCCAGGGCTGCAAGGTTGTCGCCGAGAC
GCTCAAGAATCCCGCGATGCGAAACCTGGTGGAGACGCTGGCCAACGATATCAGCGCCGGTTCCAGTTTCTCGGAGGCCC
TGGCCAAGCACCCCTCCCGCTTCGATCGCATGTTCGTCAACATGGTCGCCGCCGGCGAGCAGTCGGGTGCCCTGGACAAG
ATGCTCGAGCGCGTGGCCAGTTATCGCGAGAAGATCGAGACGCTCAAGGGCCGGGTCAAGAAGGCGCTCTACTATCCGAC
CGCCGTGGTCCTGGTCGGCATCGGCGTCACCGCGCTGCTGCTGGTGAAGGTCGTACCGCAGTTCGAGAGCCTGTTCCAGG
GCTTCGGCGCCGAGCTCCCGGCCTTCACCCAATTCACCGTACACCTGTCCCAACTGACCCAGGCTTACTGGTGGCAGGCC
ATTCTCGCCGCGACGGCGATCTTTCTCGGCCTGCGCCAGGCCATGAAGCGTTCCCCCACCTTCGCCTATCGCGCCCATCA
ACTGGTGCTCAAGCTGCCGGTGCTCGGCAACATCGTCGACAAGGGATCGATCGCCCGCTTCTCGCGGACCCTGGCCACCA
CGTTCAATGCCGGCATTCCGCTGGTGGAAGCGCTGGAGACCGCCGCCGGGGCCACCGGGAACCGCGTTCACCAGCGCGCC
ATCGCCAGTATCCGCGAAGACGTGGGGACGGGGCAGCAGCTCAACTTCGCCATGCGTCGGACCCGAATTTTCCCCATCAT
GGCGGTCCAGATGGTGAGCATCGGCGAGGAAGCCGGCGAGCTGGATACCATGCTCGACAAGGTGGCGGAGTTCTACGAGG
AAGAGGTCGACAACCAGGTCGACGCGCTGACGTCGCTGCTGGAACCCTTCATCCTGGTGGTACTGGGAACGATGGTGGGT
GGGCTGGTCGTGTCGATGTATTTGCCCATTTTCCAGATGGGCTCAGCCATTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

51.724

97.362

0.504
  pilC Acinetobacter baumannii D1279779

52.12

96.163

0.501
  pilC Pseudomonas stutzeri DSM 10701

51.139

94.724

0.484
  pilC Legionella pneumophila strain ERS1305867

49.747

94.964

0.472
  pilC Vibrio cholerae strain A1552

45.343

97.842

0.444
  pilC Vibrio campbellii strain DS40M4

42.857

95.683

0.41
  pilG Neisseria meningitidis 44/76-A

42.857

92.326

0.396
  pilG Neisseria gonorrhoeae MS11

41.414

94.964

0.393

Multiple sequence alignment