Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AAFV99_RS10855 Genome accession   NZ_CP151815
Coordinates   2126177..2126623 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PS006-42     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2121177..2131623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFV99_RS10830 (AAFV99_10830) - 2121269..2121892 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  AAFV99_RS10835 (AAFV99_10835) - 2122187..2123833 (+) 1647 WP_000277718.1 IS1182 family transposase -
  AAFV99_RS10840 (AAFV99_10840) comGA 2123858..2124832 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  AAFV99_RS10845 (AAFV99_10845) comGB 2124804..2125874 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  AAFV99_RS10850 (AAFV99_10850) comGC 2125888..2126199 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  AAFV99_RS10855 (AAFV99_10855) comGD 2126177..2126623 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAFV99_RS10860 (AAFV99_10860) comGE 2126610..2126909 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  AAFV99_RS10865 (AAFV99_10865) comGF 2126827..2127324 (+) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  AAFV99_RS10870 (AAFV99_10870) - 2127421..2127567 (+) 147 WP_001789879.1 hypothetical protein -
  AAFV99_RS10875 (AAFV99_10875) - 2127557..2128081 (+) 525 WP_001015123.1 shikimate kinase -
  AAFV99_RS10880 (AAFV99_10880) gcvT 2128240..2129331 (+) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  AAFV99_RS10885 (AAFV99_10885) gcvPA 2129351..2130697 (+) 1347 WP_000019689.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=980981 AAFV99_RS10855 WP_001788899.1 2126177..2126623(+) (comGD) [Staphylococcus aureus strain PS006-42]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=980981 AAFV99_RS10855 WP_001788899.1 2126177..2126623(+) (comGD) [Staphylococcus aureus strain PS006-42]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment