Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AADZ70_RS04420 Genome accession   NZ_CP151679
Coordinates   802852..804102 (+) Length   416 a.a.
NCBI ID   WP_342007776.1    Uniprot ID   -
Organism   Bacillus sp. YBsi01     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 797852..809102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ70_RS04390 (AADZ70_04390) - 797947..799233 (+) 1287 WP_016936068.1 pitrilysin family protein -
  AADZ70_RS04395 (AADZ70_04395) - 799292..800020 (+) 729 WP_095240826.1 SDR family oxidoreductase -
  AADZ70_RS04400 (AADZ70_04400) - 800096..800353 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  AADZ70_RS04405 (AADZ70_04405) - 800482..801273 (+) 792 WP_007409819.1 YmfK family protein -
  AADZ70_RS04410 (AADZ70_04410) - 801292..802179 (+) 888 WP_016936066.1 RodZ domain-containing protein -
  AADZ70_RS04415 (AADZ70_04415) pgsA 802253..802834 (+) 582 WP_016936065.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AADZ70_RS04420 (AADZ70_04420) cinA 802852..804102 (+) 1251 WP_342007776.1 competence/damage-inducible protein A Machinery gene
  AADZ70_RS04425 (AADZ70_04425) recA 804274..805317 (+) 1044 WP_016936063.1 recombinase RecA Machinery gene
  AADZ70_RS04430 (AADZ70_04430) - 805484..806665 (+) 1182 WP_016936062.1 serine hydrolase domain-containing protein -
  AADZ70_RS04435 (AADZ70_04435) rny 806958..808517 (+) 1560 WP_016936061.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45056.30 Da        Isoelectric Point: 5.1463

>NTDB_id=979673 AADZ70_RS04420 WP_342007776.1 802852..804102(+) (cinA) [Bacillus sp. YBsi01]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLTDSGAVSKECARELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=979673 AADZ70_RS04420 WP_342007776.1 802852..804102(+) (cinA) [Bacillus sp. YBsi01]
ATGGAAATAGCAAAAAAAGCGGAAATCATTGCAGTCGGCTCAGAGCTTCTGCTCGGACAGATCGCCAATACGAACGCTCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGCGTAAACGTGTTTTACCACACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCGGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTA
ACAAAAGAAACCATTGCAAACACGTTGGGACGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATTGAAGAGTATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTTATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGATCAAGGCTTTATATGCTGCTTCCCGGACCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCAAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCTCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCCGCTGACGGCGAGGTTACGCTTCGTTTAACGGCGAAACATGCCGATGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAGAACGGAATCACGATCTCCTCTGCCGAAAGCTTTACAGGCGGACTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGCGCGTCTCAACTTTTTGCAGGGGGCGTGGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGT
GTGAAAGCCGAGACGCTCACAGATAGCGGAGCGGTCAGCAAAGAGTGCGCGCGCGAGCTTGCCGCCGGTGTCAGAAAGCT
GACCGGAAGTGATATCGGTATCAGCTTTACAGGAGTTGCGGGTCCGGATCCGCAGGAAGGGCATGCCCCGGGCCGCGTCT
TTATCGGCATTTCCGCGGAAGGAAAAGAAGAGGTGCATGAATTTAACTTTGCCGGATCAAGAACCGGCATCAGAAAGCGT
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.385

100

0.904
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus mitis SK321

47.129

100

0.474
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus pneumoniae Rx1

46.651

100

0.469
  cinA Streptococcus pneumoniae R6

46.651

100

0.469
  cinA Streptococcus pneumoniae D39

46.411

100

0.466
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

40.665

93.99

0.382

Multiple sequence alignment