Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AADZ52_RS06680 Genome accession   NZ_CP151430
Coordinates   1320802..1322049 (+) Length   415 a.a.
NCBI ID   WP_213929929.1    Uniprot ID   -
Organism   Listeria welshimeri strain 4-43     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1315802..1327049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADZ52_RS06660 (AADZ52_06650) - 1316932..1318218 (+) 1287 WP_213929926.1 pitrilysin family protein -
  AADZ52_RS06665 (AADZ52_06655) - 1318319..1319050 (+) 732 WP_213929927.1 SDR family oxidoreductase -
  AADZ52_RS06670 (AADZ52_06660) - 1319100..1320065 (+) 966 WP_213929928.1 RodZ family helix-turn-helix domain-containing protein -
  AADZ52_RS06675 (AADZ52_06665) pgsA 1320156..1320734 (+) 579 WP_011702208.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AADZ52_RS06680 (AADZ52_06670) cinA 1320802..1322049 (+) 1248 WP_213929929.1 competence/damage-inducible protein A Machinery gene
  AADZ52_RS06685 (AADZ52_06675) recA 1322320..1323366 (+) 1047 WP_011702210.1 recombinase RecA Machinery gene
  AADZ52_RS06690 (AADZ52_06680) rny 1323669..1325231 (+) 1563 WP_003738907.1 ribonuclease Y -
  AADZ52_RS06695 (AADZ52_06685) - 1325347..1325844 (+) 498 WP_097349593.1 GNAT family N-acetyltransferase -
  AADZ52_RS06700 (AADZ52_06690) - 1325849..1326652 (+) 804 WP_185303565.1 TIGR00282 family metallophosphoesterase -
  AADZ52_RS06705 (AADZ52_06695) - 1326669..1327031 (+) 363 WP_185304856.1 YlbF family regulator -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45825.23 Da        Isoelectric Point: 4.9456

>NTDB_id=976588 AADZ52_RS06680 WP_213929929.1 1320802..1322049(+) (cinA) [Listeria welshimeri strain 4-43]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPERLKEVINIAENRSDILIFTGGLGPTEDDITKQ
ILADHLNKRLVEDEFHMNKITEYFASRSRKMTENNKLQAVIIEDSVVLNNDYGFAAGMYLKANKHTYILLPGPPSEMKPM
FTSYANPLLVSENGEKIILESKIMRFFGIGESQLAADLNDLILNQVNPTLATYAGDNEVVVRITATASTKEKAATLVKDM
EEEILRRDGTFLYGYGEVSLPEHVTAMLLERKMTIAAAESFTAGLFQAEIARFPGISSIFKGGMVTYSEEVKQSMLQVPA
EVIEEHGVVSSECAKVMAENVRRLCDTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGNEPEAFQYVYGRDRNHNRRRAV
KQGFQLIKHFLETNK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=976588 AADZ52_RS06680 WP_213929929.1 1320802..1322049(+) (cinA) [Listeria welshimeri strain 4-43]
ATGGCAAGTGCAGAGATTATTGCAGTGGGAACAGAATTATTACTAGGACAAATCGTGAACTCTAATGCAGCATTTATTTC
ACAAGAATTAGCTGCTGATGGGATTTACGTTTATCATCACACCGTTGTTGGTGATAATCCTGAACGTTTAAAAGAAGTAA
TAAATATTGCAGAAAATCGTAGTGATATTTTAATATTTACAGGTGGACTTGGACCAACAGAAGATGATATTACAAAACAA
ATCTTAGCTGATCATTTAAACAAAAGGTTAGTAGAAGACGAGTTTCATATGAATAAAATTACGGAATATTTCGCATCAAG
AAGTAGAAAAATGACGGAAAATAACAAATTACAAGCCGTTATTATTGAGGATTCAGTTGTACTAAATAACGACTATGGCT
TCGCAGCTGGTATGTATTTAAAAGCAAATAAGCATACATATATTTTATTGCCTGGTCCCCCGTCTGAAATGAAGCCAATG
TTTACTAGCTATGCTAATCCGCTTCTTGTAAGTGAAAACGGCGAAAAAATTATTTTAGAATCTAAAATAATGCGATTTTT
CGGTATAGGTGAGTCTCAATTGGCTGCAGATTTAAATGATTTAATTCTTAATCAAGTAAATCCAACACTTGCAACATATG
CAGGCGACAATGAGGTTGTAGTTCGTATCACTGCTACAGCTAGTACAAAAGAAAAAGCAGCTACATTAGTAAAGGATATG
GAAGAAGAGATTTTACGCCGTGATGGTACTTTCTTATACGGCTATGGAGAAGTTTCCTTGCCAGAGCATGTAACGGCAAT
GTTATTAGAAAGAAAAATGACGATAGCTGCTGCTGAAAGTTTTACAGCTGGATTATTCCAAGCTGAAATTGCTCGTTTTC
CTGGTATATCAAGTATATTTAAAGGCGGAATGGTAACTTATAGTGAAGAAGTTAAGCAATCAATGTTGCAAGTCCCAGCT
GAAGTTATAGAAGAGCATGGTGTTGTAAGTTCGGAATGTGCCAAAGTAATGGCAGAAAATGTAAGACGCCTTTGTGACAC
GGATATTGGTATTAGTTTTACTGGTGTAGCTGGTCCAGATAGTCTGGAAGGTCACCCAGCAGGCACAATTTGGATTGGCT
TAAGTGTCAAAGGGAATGAACCTGAAGCATTTCAGTATGTGTATGGTCGTGATAGAAACCATAATCGACGTAGAGCAGTA
AAACAAGGATTTCAACTAATTAAGCATTTTTTAGAAACGAATAAGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

50.358

100

0.508
  cinA Streptococcus mitis SK321

50.239

100

0.506
  cinA Streptococcus pneumoniae Rx1

50.119

100

0.506
  cinA Streptococcus pneumoniae R6

50.119

100

0.506
  cinA Streptococcus pneumoniae D39

49.881

100

0.504
  cinA Streptococcus mitis NCTC 12261

49.522

100

0.499
  cinA Streptococcus mutans UA159

49.519

100

0.496
  cinA Bacillus subtilis subsp. subtilis str. 168

49.389

98.554

0.487
  cinA Streptococcus suis isolate S10

39.078

99.277

0.388

Multiple sequence alignment