Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   AAC899_RS01315 Genome accession   NZ_CP151168
Coordinates   299276..301372 (+) Length   698 a.a.
NCBI ID   WP_171250625.1    Uniprot ID   -
Organism   Acinetobacter soli strain HY24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 294276..306372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC899_RS01295 (AAC899_01295) comM 296266..297336 (+) 1071 WP_004934220.1 pilus assembly protein PilM Machinery gene
  AAC899_RS01300 (AAC899_01300) comN 297323..297961 (+) 639 WP_048764556.1 PilN domain-containing protein Machinery gene
  AAC899_RS01305 (AAC899_01305) comO 297958..298692 (+) 735 WP_048764512.1 type 4a pilus biogenesis protein PilO Machinery gene
  AAC899_RS01310 (AAC899_01310) comL 298692..299216 (+) 525 WP_343316457.1 pilus assembly protein PilP Machinery gene
  AAC899_RS01315 (AAC899_01315) comQ 299276..301372 (+) 2097 WP_171250625.1 type IV pilus secretin PilQ family protein Machinery gene
  AAC899_RS01320 (AAC899_01320) aroK 301409..301951 (+) 543 WP_004944978.1 shikimate kinase AroK -
  AAC899_RS01325 (AAC899_01325) aroB 301975..303063 (+) 1089 WP_343316458.1 3-dehydroquinate synthase -
  AAC899_RS01330 (AAC899_01330) - 303073..303921 (+) 849 WP_004944984.1 hypothetical protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 75393.84 Da        Isoelectric Point: 9.1466

>NTDB_id=975563 AAC899_RS01315 WP_171250625.1 299276..301372(+) (comQ) [Acinetobacter soli strain HY24]
MKQVIRQFTMASVTYAVMQVASAQVAITNVVPMTIPGQGTEVRIMFNGLPPQPQSYQLEQPSRLILDFDQATQKLAKRSI
ALTSNEASGIEVSADEKRARVTVNLKNSGAFTTRVEGNVFILKINNLASAATPLAAPAPKNQLSIGNIGFQKGAQGEGQV
VIDLQGSTTPVDVQQEGSKVVVRFPGIKIPTHLARRLNTTEFATPVASIDAFNNGSNGVVSIQSTGSYEYMAYQAENKLT
ISLKRPQDNVRLNSKNNQNYTGKKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLRLKDVPWDQALDIILKTKN
LDKRRNGNVIWIAPVTEMIKSEEDEAKAIAQSTKLSPLQTEFIQLKYAKAVDIEKLITQGRNSGTTSTATTGGATVEPLG
DSVGTLLSPRGTISFDPRTNTLILNDTAQKIDQIRRMIDLLDIPVKQVMIEARIVRASTSFSKEMGVKWGVLSTGNDLQV
TGKNSTLWNLRNGDTINNNLSVDLGVSTAGASSISFGLISLSDFMLDLELSALQADGYGEVISTPKVMSADKQKAKVATG
VEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIANDSINSYAQNGEAILNKNAINTNVLVNNGETVV
LGGVFEQTTSNAVTKVPFLGDLPYVGRLFKKTAKSEAKNELLIFVTPRIVNDTIVGNH

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=975563 AAC899_RS01315 WP_171250625.1 299276..301372(+) (comQ) [Acinetobacter soli strain HY24]
ATGAAACAGGTAATTCGTCAATTTACGATGGCAAGTGTGACCTATGCCGTGATGCAAGTTGCAAGTGCGCAGGTCGCCAT
TACCAATGTCGTCCCGATGACGATTCCGGGACAAGGGACCGAAGTGCGGATTATGTTTAATGGACTGCCGCCACAACCTC
AGTCGTATCAACTTGAGCAGCCTTCTCGTCTGATTCTGGATTTCGATCAAGCCACGCAAAAACTGGCCAAACGCAGTATT
GCGCTCACCAGCAATGAAGCCTCGGGAATTGAAGTCAGTGCAGATGAAAAACGCGCCCGTGTCACGGTGAATCTTAAAAA
TTCAGGTGCGTTTACCACACGTGTAGAAGGCAATGTCTTCATTCTTAAAATTAATAATCTGGCCTCTGCCGCGACTCCAC
TTGCCGCTCCAGCCCCAAAAAACCAGCTTTCTATTGGAAATATTGGATTTCAAAAAGGAGCACAAGGTGAAGGACAGGTG
GTGATTGATCTGCAAGGCAGTACCACGCCTGTCGATGTGCAGCAAGAAGGCAGCAAGGTAGTGGTGCGTTTTCCCGGCAT
AAAAATTCCGACGCATCTGGCGCGCCGCCTGAATACCACCGAGTTTGCAACGCCTGTGGCATCGATTGATGCATTCAATA
ATGGCAGCAACGGTGTGGTCTCGATTCAGTCGACGGGCAGTTATGAATACATGGCGTATCAGGCCGAAAATAAACTCACC
ATCAGTCTAAAGCGTCCACAAGATAATGTCAGACTAAACTCAAAAAACAACCAAAACTATACGGGTAAGAAGATCTCACT
GGATTTTCAAGACATTGAAGTACGCCGCGTATTACAGTTACTGGCCGATTTTACCAATATCAATATGGTGACCGCAGATT
CTGTACAAGGCAATATTACCTTGCGCCTTAAAGACGTGCCGTGGGATCAGGCGCTGGATATTATTTTAAAAACCAAAAAT
CTGGACAAGCGCCGTAATGGGAATGTGATCTGGATAGCACCTGTCACCGAGATGATCAAGTCTGAAGAAGATGAAGCCAA
AGCGATTGCACAAAGTACCAAGCTCTCGCCGTTACAAACCGAGTTTATTCAGCTTAAATATGCCAAAGCGGTAGATATTG
AAAAATTGATTACTCAAGGTCGAAACAGCGGTACTACCAGTACTGCTACGACTGGTGGTGCGACGGTGGAGCCTTTGGGC
GATAGCGTTGGCACTTTGTTAAGCCCGCGTGGCACGATTTCTTTTGATCCGCGTACCAACACTCTTATTTTAAATGACAC
TGCGCAAAAGATTGACCAGATCCGACGCATGATTGATTTGCTGGATATTCCGGTGAAGCAAGTCATGATTGAAGCACGGA
TTGTGCGTGCATCAACCTCGTTTAGTAAAGAAATGGGAGTGAAATGGGGCGTCTTGTCGACAGGCAATGATTTACAGGTC
ACAGGTAAAAATTCAACCTTATGGAACTTGCGTAATGGCGACACCATTAACAATAACTTAAGTGTTGACTTAGGGGTATC
GACAGCAGGCGCCAGCAGTATTTCATTTGGTTTAATCAGTTTGTCTGATTTTATGCTGGACTTGGAGCTGTCTGCCTTGC
AGGCTGACGGATACGGCGAAGTGATTTCAACACCGAAAGTGATGTCTGCCGATAAGCAAAAAGCCAAAGTAGCAACCGGT
GTGGAAGTGCCGTATCAGTCCACCACCAATTCGGCAGCAGGATCAACTGCCACAACCTCATTTAAAGAAGCATTGCTCAG
TCTGGAAGTCACACCCAACATTACCCCAGACGGTAAAATTTTGATGGAACTGAATATTGCCAATGACTCGATCAATAGTT
ATGCCCAAAACGGTGAGGCCATTTTAAATAAAAATGCGATCAATACCAATGTCTTGGTGAATAATGGTGAGACAGTTGTC
TTGGGTGGTGTATTCGAACAAACCACGTCTAATGCGGTGACTAAAGTGCCATTTTTAGGTGATTTGCCTTATGTGGGGCG
TTTATTTAAAAAGACCGCAAAAAGTGAAGCGAAAAATGAACTGCTAATTTTTGTGACACCTCGAATAGTTAATGACACTA
TTGTTGGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(532-690)

Secretin and TonB N terminus short domain (STN)

(291-334)

AMIN domain (AMIN)

(38-114)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Acinetobacter baylyi ADP1

86.883

100

0.883
  pilQ Acinetobacter baumannii strain A118

69.697

100

0.725
  pilQ Acinetobacter baumannii D1279779

69.697

100

0.725
  pilQ Pseudomonas aeruginosa PAK

40.714

100

0.408
  pilQ Legionella pneumophila strain ERS1305867

38.462

98.711

0.38
  pilQ Legionella pneumophila strain Lp02

38.316

98.711

0.378

Multiple sequence alignment