Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   AAC899_RS01305 Genome accession   NZ_CP151168
Coordinates   297958..298692 (+) Length   244 a.a.
NCBI ID   WP_048764512.1    Uniprot ID   -
Organism   Acinetobacter soli strain HY24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 292958..303692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC899_RS01290 (AAC899_01290) ponA 293568..296099 (-) 2532 WP_034440435.1 penicillin-binding protein PBP1a -
  AAC899_RS01295 (AAC899_01295) comM 296266..297336 (+) 1071 WP_004934220.1 pilus assembly protein PilM Machinery gene
  AAC899_RS01300 (AAC899_01300) comN 297323..297961 (+) 639 WP_048764556.1 PilN domain-containing protein Machinery gene
  AAC899_RS01305 (AAC899_01305) comO 297958..298692 (+) 735 WP_048764512.1 type 4a pilus biogenesis protein PilO Machinery gene
  AAC899_RS01310 (AAC899_01310) comL 298692..299216 (+) 525 WP_343316457.1 pilus assembly protein PilP Machinery gene
  AAC899_RS01315 (AAC899_01315) comQ 299276..301372 (+) 2097 WP_171250625.1 type IV pilus secretin PilQ family protein Machinery gene
  AAC899_RS01320 (AAC899_01320) aroK 301409..301951 (+) 543 WP_004944978.1 shikimate kinase AroK -
  AAC899_RS01325 (AAC899_01325) aroB 301975..303063 (+) 1089 WP_343316458.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27548.41 Da        Isoelectric Point: 6.2644

>NTDB_id=975561 AAC899_RS01305 WP_048764512.1 297958..298692(+) (comO) [Acinetobacter soli strain HY24]
MKRDPVDHTAPEQAPVQKKRMTVDKFFQQFNTLDMSNYGSWPKSVKITCWIFIFFLVVALGYFVMIRPQLDTIQTARAQE
QNLLNEFKEKESKLRNLQQYQRQLVEMQASFNQQLTQLPKESEIPGLVEDINMTGVNSGLKFKNIRLENEVKQEIFVEQP
ISIEATGDYHAFGAFVSGISALPRIVTIHDFVIEAKPAKETSDIPQVDYSVKAKTYRYIGVDEQNAASSVQPSAAPAAAQ
GGTP

Nucleotide


Download         Length: 735 bp        

>NTDB_id=975561 AAC899_RS01305 WP_048764512.1 297958..298692(+) (comO) [Acinetobacter soli strain HY24]
ATGAAACGAGATCCAGTCGATCACACGGCACCTGAGCAAGCACCTGTGCAGAAAAAACGCATGACGGTGGATAAGTTTTT
TCAGCAGTTTAATACGCTCGACATGAGCAATTACGGGAGCTGGCCCAAATCGGTCAAAATCACCTGCTGGATATTTATTT
TTTTCTTAGTGGTGGCGCTTGGTTATTTTGTCATGATTCGTCCGCAGTTAGACACCATACAGACCGCGCGTGCGCAAGAA
CAAAACCTTCTGAATGAGTTTAAAGAAAAAGAATCCAAACTACGCAATCTACAGCAGTATCAGCGTCAATTGGTCGAAAT
GCAGGCCAGCTTTAATCAGCAGCTGACGCAACTTCCAAAGGAAAGTGAGATTCCGGGCTTGGTAGAAGACATCAACATGA
CGGGTGTGAACTCGGGTTTAAAATTTAAAAATATTCGGCTTGAAAATGAGGTCAAACAAGAAATTTTTGTAGAGCAGCCA
ATTTCGATTGAAGCCACGGGTGACTACCATGCTTTTGGTGCCTTTGTCAGTGGTATTTCGGCCTTGCCGCGTATCGTGAC
CATACATGATTTTGTCATTGAAGCAAAACCTGCCAAAGAAACCTCGGATATTCCGCAGGTCGATTACAGCGTCAAGGCGA
AAACATATCGTTATATCGGTGTAGACGAGCAAAACGCTGCCTCGTCGGTTCAGCCATCTGCCGCACCCGCAGCAGCACAA
GGGGGGACACCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

81.224

100

0.816
  pilO Acinetobacter baumannii D1279779

69.583

98.361

0.684

Multiple sequence alignment