Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AABL52_RS08590 Genome accession   NZ_CP151108
Coordinates   1635560..1636798 (+) Length   412 a.a.
NCBI ID   WP_097844225.1    Uniprot ID   -
Organism   Bacillus paramobilis strain IMGN7     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1630560..1641798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABL52_RS08560 (AABL52_08560) - 1630612..1631898 (+) 1287 WP_341519159.1 pitrilysin family protein -
  AABL52_RS08565 (AABL52_08565) - 1632002..1632715 (+) 714 WP_097844222.1 SDR family oxidoreductase -
  AABL52_RS08570 (AABL52_08570) - 1632791..1633039 (+) 249 WP_000114455.1 DUF3243 domain-containing protein -
  AABL52_RS08575 (AABL52_08575) - 1633179..1633964 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  AABL52_RS08580 (AABL52_08580) - 1633986..1634897 (+) 912 WP_097844223.1 helix-turn-helix domain-containing protein -
  AABL52_RS08585 (AABL52_08585) pgsA 1634961..1635539 (+) 579 WP_001052972.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AABL52_RS08590 (AABL52_08590) cinA 1635560..1636798 (+) 1239 WP_097844225.1 competence/damage-inducible protein CinA Machinery gene
  AABL52_RS08595 (AABL52_08595) recA 1636943..1637551 (+) 609 Protein_1684 recombinase RecA -
  AABL52_RS08600 (AABL52_08600) - 1637649..1638272 (+) 624 WP_341519160.1 topoisomerase I -
  AABL52_RS08605 (AABL52_08605) recA 1638538..1638963 (+) 426 WP_001115376.1 recombinase RecA Machinery gene
  AABL52_RS08610 (AABL52_08610) rny 1639445..1641007 (+) 1563 WP_341519161.1 ribonuclease Y -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45031.24 Da        Isoelectric Point: 5.4691

>NTDB_id=974881 AABL52_RS08590 WP_097844225.1 1635560..1636798(+) (cinA) [Bacillus paramobilis strain IMGN7]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
ISSSLGGELVYDEQALASISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
ISYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNADEAAKLIQHMED
LILERVGEFFYGYDQEFLHDKAIGLLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEGV
LSTDGAVSKECARYLAENVKGLLKADIGISFTGVAGPDASEHKEPGTVFVGLAMKDEPTVVFSLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=974881 AABL52_RS08590 WP_097844225.1 1635560..1636798(+) (cinA) [Bacillus paramobilis strain IMGN7]
ATGAATGCTGAAATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAGCGATTACAGCAGGCAATTG
AAGTTGCGGAAGAACGTGCTGACATGCTTATTTTCACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAAGAAACG
ATATCTTCTAGTTTGGGTGGAGAGCTAGTGTATGATGAACAGGCATTAGCATCGATAAGCGATTATTTTAAGCGTACAGG
TCGCGAGTTCACAGAGAATAATAAAAAGCAGGCGCTCGTTTTGAATGGAGCAACTGTATTTGCGAATGATCACGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGGAAAGTTTATATTTTATTACCAGGACCACCGAAAGAGATGAAGCCGATGTAT
ATAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGCTTCTTCGGGAT
TGGGGAATCTCAATTAGAAGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATCGCCCCACTTGCGAATG
ATGGAGAAGTGACACTACGTTTAACTGCCAAACATCAAAATGCTGATGAAGCGGCGAAACTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGATCAAGAGTTTCTGCATGATAAGGCGATAGGGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACCGGTGGTCTTTTTGGCAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAGCATGTTTTACATGTACCTGAGGGAGTG
TTATCTACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGGTTTATTAAAAGCAGATAT
CGGAATTAGCTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAGCCGGGAACGGTATTTGTTGGATTGGCGA
TGAAGGATGAACCAACTGTAGTCTTTTCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGGGAACGTTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.495

100

0.585
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.074

98.544

0.444
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381

Multiple sequence alignment