Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AABD50_RS04485 | Genome accession | NZ_CP150862 |
| Coordinates | 961045..961329 (+) | Length | 94 a.a. |
| NCBI ID | WP_023624118.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain vp-201911 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 956045..966329
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABD50_RS04475 (AABD50_04475) | - | 958563..958835 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| AABD50_RS04480 (AABD50_04480) | ppiD | 959035..960894 (+) | 1860 | WP_005482527.1 | peptidylprolyl isomerase | - |
| AABD50_RS04485 (AABD50_04485) | comEA | 961045..961329 (+) | 285 | WP_023624118.1 | ComEA family DNA-binding protein | Machinery gene |
| AABD50_RS04490 (AABD50_04490) | rrtA | 961420..961971 (-) | 552 | WP_169610744.1 | rhombosortase | - |
| AABD50_RS04495 (AABD50_04495) | - | 961975..962589 (+) | 615 | WP_169610742.1 | DTW domain-containing protein | - |
| AABD50_RS04500 (AABD50_04500) | - | 962599..963933 (-) | 1335 | WP_169610740.1 | anti-phage deoxyguanosine triphosphatase | - |
| AABD50_RS04505 (AABD50_04505) | yfbR | 963946..964530 (-) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| AABD50_RS04510 (AABD50_04510) | - | 964621..965835 (-) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10205.90 Da Isoelectric Point: 6.9786
>NTDB_id=973135 AABD50_RS04485 WP_023624118.1 961045..961329(+) (comEA) [Vibrio parahaemolyticus strain vp-201911]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEARILL
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEARILL
Nucleotide
Download Length: 285 bp
>NTDB_id=973135 AABD50_RS04485 WP_023624118.1 961045..961329(+) (comEA) [Vibrio parahaemolyticus strain vp-201911]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGCCCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGCCCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
98.936 |
100 |
0.989 |
| comEA | Vibrio campbellii strain DS40M4 |
76.842 |
100 |
0.777 |
| comEA | Vibrio cholerae C6706 |
63.83 |
100 |
0.638 |
| comEA | Vibrio cholerae strain A1552 |
63.83 |
100 |
0.638 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
54.839 |
65.957 |
0.362 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
54.839 |
65.957 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
39.535 |
91.489 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
39.535 |
91.489 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
39.535 |
91.489 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
39.535 |
91.489 |
0.362 |