Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V8V52_RS10570 Genome accession   NZ_CP150648
Coordinates   2027471..2028709 (+) Length   412 a.a.
NCBI ID   WP_088034589.1    Uniprot ID   A0A243A608
Organism   Bacillus mycoides strain 4BM1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2022471..2033709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V52_RS10540 (V8V52_10540) - 2022508..2023794 (+) 1287 WP_002014592.1 pitrilysin family protein -
  V8V52_RS10545 (V8V52_10545) - 2023912..2024625 (+) 714 WP_002014593.1 SDR family oxidoreductase -
  V8V52_RS10550 (V8V52_10550) - 2024702..2024950 (+) 249 WP_000114449.1 DUF3243 domain-containing protein -
  V8V52_RS10555 (V8V52_10555) - 2025090..2025875 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  V8V52_RS10560 (V8V52_10560) - 2025897..2026808 (+) 912 WP_002128706.1 helix-turn-helix domain-containing protein -
  V8V52_RS10565 (V8V52_10565) pgsA 2026872..2027450 (+) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V8V52_RS10570 (V8V52_10570) cinA 2027471..2028709 (+) 1239 WP_088034589.1 competence/damage-inducible protein A Machinery gene
  V8V52_RS10575 (V8V52_10575) recA 2028852..2029460 (+) 609 Protein_2007 recombinase RecA -
  V8V52_RS10580 (V8V52_10580) - 2029558..2030181 (+) 624 WP_088034594.1 topoisomerase I -
  V8V52_RS10585 (V8V52_10585) recA 2030448..2030873 (+) 426 WP_002088046.1 recombinase RecA Machinery gene
  V8V52_RS10590 (V8V52_10590) rny 2031357..2032919 (+) 1563 WP_002111330.1 ribonuclease Y -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45652.01 Da        Isoelectric Point: 5.1194

>NTDB_id=970927 V8V52_RS10570 WP_088034589.1 2027471..2028709(+) (cinA) [Bacillus mycoides strain 4BM1]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNTNRKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=970927 V8V52_RS10570 WP_088034589.1 2027471..2028709(+) (cinA) [Bacillus mycoides strain 4BM1]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGCACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAACAGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAGTAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTCA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(259-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243A608

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

45.823

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.823

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.461
  cinA Streptococcus pneumoniae R6

45.346

100

0.461
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.459
  cinA Streptococcus pneumoniae D39

45.107

100

0.459
  cinA Streptococcus mutans UA159

46.305

98.544

0.456
  cinA Streptococcus suis isolate S10

40.957

91.262

0.374

Multiple sequence alignment