Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   WN947_RS05260 Genome accession   NZ_CP150491
Coordinates   1051188..1052438 (-) Length   416 a.a.
NCBI ID   WP_122957668.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain S8     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1046188..1057438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN947_RS05245 - 1047677..1048318 (-) 642 WP_003385781.1 RecX family transcriptional regulator -
  WN947_RS05250 recA 1048384..1049442 (-) 1059 WP_003385782.1 recombinase RecA Machinery gene
  WN947_RS05255 - 1049605..1051191 (-) 1587 WP_003385783.1 DEAD/DEAH box helicase -
  WN947_RS05260 cinA 1051188..1052438 (-) 1251 WP_122957668.1 competence/damage-inducible protein A Machinery gene
  WN947_RS05265 pgsA 1052492..1053067 (-) 576 WP_003385785.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WN947_RS05270 rimO 1053068..1054414 (-) 1347 WP_003385786.1 30S ribosomal protein S12 methylthiotransferase RimO -
  WN947_RS05275 - 1054529..1055437 (-) 909 WP_003385787.1 RodZ domain-containing protein -
  WN947_RS05280 - 1055456..1056235 (-) 780 WP_003385788.1 YmfK family protein -
  WN947_RS05285 - 1056360..1056629 (-) 270 WP_003385789.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45221.03 Da        Isoelectric Point: 5.9146

>NTDB_id=970641 WN947_RS05260 WP_122957668.1 1051188..1052438(-) (cinA) [Brevibacillus borstelensis strain S8]
MKAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLMQVIKQASVRSDLIIFTGGLGPTQDDLTKET
VAAHIDAGLVTDPVAMERIESFFHQRGIVMTENNRKQALVFDRGQVFPNDTGMAPGMAAEHNGRTFVLLPGPPSELYPMA
DRYVMPYLIGLLPEQQVVHSHVLRFYGIGESALEEQLLDLIESQENPTIAPYAKEFEVTLRITARAKTVAEAEKLIEPVE
REIYRRLGEFIYAKGETSLHEVLVEELKQNGKTIACAESCTGGKVASLVTSVPGSSTVMRGGIVCYTNDAKRELVDVPQA
VLDTDGAVSEQTARLLAENVRQKLRATCGISVTGVAGPDPSEGKPVGLVYIGVAIDGLPTVVKELRLAGRRHAIVGRAAK
FALFYALQRLKKGERI

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=970641 WN947_RS05260 WP_122957668.1 1051188..1052438(-) (cinA) [Brevibacillus borstelensis strain S8]
ATGAAAGCGGAGATTATTGCTGTTGGAACAGAGCTTTTACTGGGGCAGATCGCCAATACCAATGCGCAGTTTTTGTCGCA
AAAATTGGCGGAGATCGGCGTAGGAGTCTATTTCCATACGGTTGTGGGCGACAACACCGAGCGGCTGATGCAGGTCATCA
AGCAAGCTTCTGTCCGCTCCGACCTGATTATTTTTACCGGCGGTCTGGGCCCGACTCAGGACGATTTGACCAAGGAAACG
GTCGCGGCACATATTGACGCCGGACTTGTGACTGATCCTGTGGCGATGGAACGCATTGAATCGTTTTTTCACCAGCGCGG
CATTGTCATGACAGAAAACAATCGCAAGCAGGCGCTCGTTTTTGACCGCGGGCAGGTGTTTCCGAACGACACGGGGATGG
CGCCGGGGATGGCAGCAGAGCACAATGGCCGTACATTTGTACTTTTGCCGGGGCCGCCGAGCGAACTGTACCCGATGGCC
GATCGGTACGTCATGCCTTATTTGATCGGCTTGCTGCCGGAGCAGCAGGTGGTTCACTCCCATGTCCTGCGTTTTTACGG
GATTGGCGAATCCGCGTTGGAAGAACAGCTGCTCGATCTGATTGAAAGCCAGGAGAATCCGACGATTGCCCCTTATGCCA
AAGAGTTTGAGGTTACACTGCGGATTACGGCACGGGCAAAAACGGTGGCCGAAGCAGAGAAGCTGATCGAGCCGGTCGAG
CGGGAGATTTACAGACGTTTGGGCGAATTTATCTATGCCAAAGGGGAAACCTCTCTCCACGAGGTCCTTGTAGAAGAGTT
GAAACAAAACGGGAAGACCATCGCATGCGCCGAGAGCTGCACAGGCGGCAAAGTCGCCTCGCTAGTTACCTCCGTTCCCG
GCAGTTCAACAGTCATGCGCGGGGGAATCGTATGCTATACGAACGATGCCAAGCGCGAGCTGGTCGATGTTCCCCAAGCT
GTACTCGACACTGACGGAGCGGTAAGTGAGCAAACAGCAAGGCTGCTTGCCGAAAACGTGCGTCAAAAACTGCGCGCGAC
CTGCGGCATTTCGGTAACCGGTGTTGCCGGTCCGGACCCTTCAGAGGGCAAACCCGTGGGACTTGTTTACATTGGAGTGG
CAATAGATGGACTGCCGACTGTTGTCAAAGAGCTCCGACTTGCCGGCAGAAGACACGCTATCGTGGGACGTGCTGCCAAA
TTTGCTTTATTCTACGCGCTTCAGCGACTAAAGAAAGGTGAACGTATATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.365

98.798

0.498
  cinA Streptococcus pneumoniae TIGR4

48.086

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.847

100

0.481
  cinA Streptococcus pneumoniae R6

47.847

100

0.481
  cinA Streptococcus pneumoniae D39

47.608

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus mutans UA159

46.366

95.913

0.445
  cinA Streptococcus suis isolate S10

41.013

94.952

0.389

Multiple sequence alignment