Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SOZ35_RS09120 Genome accession   NZ_CP150480
Coordinates   1784300..1785550 (+) Length   416 a.a.
NCBI ID   WP_285977901.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain TL401     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1779300..1790550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOZ35_RS09090 (SOZ35_09090) - 1779383..1780669 (+) 1287 WP_340640606.1 pitrilysin family protein -
  SOZ35_RS09095 (SOZ35_09095) - 1780726..1781454 (+) 729 WP_216414181.1 SDR family oxidoreductase -
  SOZ35_RS09100 (SOZ35_09100) - 1781535..1781792 (+) 258 WP_340640607.1 DUF3243 domain-containing protein -
  SOZ35_RS09105 (SOZ35_09105) - 1781922..1782713 (+) 792 WP_003328872.1 YmfK family protein -
  SOZ35_RS09110 (SOZ35_09110) - 1782732..1783649 (+) 918 WP_340640608.1 RodZ family helix-turn-helix domain-containing protein -
  SOZ35_RS09115 (SOZ35_09115) pgsA 1783700..1784281 (+) 582 WP_003328870.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SOZ35_RS09120 (SOZ35_09120) cinA 1784300..1785550 (+) 1251 WP_285977901.1 competence/damage-inducible protein A Machinery gene
  SOZ35_RS09125 (SOZ35_09125) recA 1785722..1786765 (+) 1044 WP_003328867.1 recombinase RecA Machinery gene
  SOZ35_RS09130 (SOZ35_09130) - 1787052..1788281 (+) 1230 WP_340640609.1 serine hydrolase domain-containing protein -
  SOZ35_RS09135 (SOZ35_09135) rny 1788540..1790102 (+) 1563 WP_003328865.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45171.43 Da        Isoelectric Point: 4.8535

>NTDB_id=970481 SOZ35_RS09120 WP_285977901.1 1784300..1785550(+) (cinA) [Bacillus atrophaeus strain TL401]
MELGKKAEIIAVGSELLLGQITNTNAQFISKGLAEIGINVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIASVLGRPLVLDDEAFQSIEDYFKKTKRTMSPNNRKQALVIEGSDVLANKFGMAPGMLTEHEARLYMLLPGPPSEL
HPMFENEAKPLLLEKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADESETERLL
KETEAVILDRVGEFFYGYDDTSLVKELSKACKEKGMTLSSAESFTGGLFAEWLTDLSGASQLFAGGVVCYSNEMKQHTLG
VKPDTLQQFGAVSKECAGELASGIKRLTGSDIGISFTGVAGPEGQEGHAPGHVFIGIFADGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=970481 SOZ35_RS09120 WP_285977901.1 1784300..1785550(+) (cinA) [Bacillus atrophaeus strain TL401]
ATGGAGTTAGGAAAAAAAGCAGAAATTATTGCGGTCGGTTCAGAGCTTTTACTCGGTCAGATCACCAATACAAATGCTCA
ATTTATCAGTAAAGGACTTGCCGAGATCGGCATTAATGTGTTTTATCATACAGCTGTCGGAGACAACCCTGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGTTCTGATTTTATCATTTTTTCAGGGGGGCTCGGACCGACGAAGGATGATTTA
ACAAAAGAAACAATCGCAAGTGTGCTGGGCCGTCCGCTCGTTCTTGATGATGAGGCTTTTCAATCAATTGAAGATTATTT
CAAGAAAACAAAGCGTACGATGTCACCGAATAACCGTAAACAGGCGCTTGTGATTGAAGGCTCAGACGTATTGGCCAATA
AATTCGGCATGGCGCCGGGGATGCTGACAGAGCACGAAGCCCGTCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAACTG
CACCCTATGTTTGAAAACGAGGCCAAGCCGCTTCTTCTTGAAAAACTCGGATCAAATGAAAAAATCGTTTCAACCGTTCT
CCGTTTTTTTGGAATAGGCGAGTCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCACAGACTAATCCGACAATTG
CTCCTTTGGCTGCGGACGGAGAAGTGACGTTGCGCCTCACTGCAAAGCATGCGGATGAATCGGAAACCGAGCGGCTGCTA
AAAGAGACTGAAGCCGTGATTTTAGACCGTGTCGGAGAGTTTTTCTACGGGTATGATGATACATCTCTTGTTAAAGAGCT
TTCAAAAGCGTGCAAGGAAAAAGGAATGACTCTTTCTTCAGCGGAGAGCTTTACAGGCGGTCTGTTCGCTGAATGGCTGA
CTGATTTAAGCGGTGCTTCGCAATTGTTTGCCGGCGGCGTTGTTTGCTATTCAAATGAGATGAAGCAGCACACCTTGGGG
GTAAAGCCTGACACCCTGCAGCAGTTCGGAGCAGTCAGCAAAGAATGCGCGGGAGAGCTTGCCTCGGGGATTAAACGGCT
GACGGGCAGTGACATTGGAATCAGTTTTACCGGCGTGGCCGGTCCTGAAGGGCAAGAGGGCCATGCCCCGGGACATGTCT
TTATCGGCATTTTCGCGGACGGAAAAGAAGAGGTTCATGAATTTAACTTTGCAGGCTCCAGAACAGGCGTCAGAAAGCGT
GCTGCCAAATACGGATGTCATTTAATCCTGAAACTCTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

88.942

100

0.889
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus mitis SK321

46.172

100

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus mutans UA159

46.489

99.279

0.462
  cinA Streptococcus suis isolate S10

42.287

90.385

0.382

Multiple sequence alignment