Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VUK78_RS27190 Genome accession   NZ_CP150467
Coordinates   3604688..3605797 (-) Length   369 a.a.
NCBI ID   WP_340700098.1    Uniprot ID   -
Organism   Vibrio harveyi strain NH-LM1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3599688..3610797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUK78_RS27160 (VUK78_27160) hemF 3600217..3601134 (-) 918 WP_340700096.1 oxygen-dependent coproporphyrinogen oxidase -
  VUK78_RS27165 (VUK78_27165) - 3601169..3601726 (-) 558 WP_005450969.1 L-threonylcarbamoyladenylate synthase -
  VUK78_RS27170 (VUK78_27170) purE 3601926..3602411 (+) 486 WP_061065488.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VUK78_RS27175 (VUK78_27175) - 3602416..3603549 (+) 1134 WP_340700097.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VUK78_RS27180 (VUK78_27180) - 3603613..3604182 (-) 570 WP_005450974.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  VUK78_RS27185 (VUK78_27185) - 3604206..3604685 (-) 480 WP_005429833.1 DUF494 family protein -
  VUK78_RS27190 (VUK78_27190) dprA 3604688..3605797 (-) 1110 WP_340700098.1 DNA-processing protein DprA Machinery gene
  VUK78_RS27195 (VUK78_27195) - 3605781..3606875 (-) 1095 WP_152163768.1 LysM peptidoglycan-binding domain-containing protein -
  VUK78_RS27200 (VUK78_27200) def 3607014..3607532 (+) 519 WP_005450979.1 peptide deformylase -
  VUK78_RS27205 (VUK78_27205) fmt 3607566..3608513 (+) 948 WP_050937888.1 methionyl-tRNA formyltransferase -
  VUK78_RS27210 (VUK78_27210) rsmB 3608595..3609878 (+) 1284 WP_340700099.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39725.40 Da        Isoelectric Point: 6.0412

>NTDB_id=970435 VUK78_RS27190 WP_340700098.1 3604688..3605797(-) (dprA) [Vibrio harveyi strain NH-LM1]
MKLRNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVGYSTEQLQLLGFTTKQLQAWSEVDKEVDACLTWASASSHHH
IVTLADTLYPPLLKQTVAPPPLLFIKGEASCLSQPQIAMVGSRNASVDGLQHARQFAADLVKHDLIVTSGLALGIDGHAH
DGALQADGKTIAVLGSGLEQVYPARHRGLARRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQDREVFAIPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSTAIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=970435 VUK78_RS27190 WP_340700098.1 3604688..3605797(-) (dprA) [Vibrio harveyi strain NH-LM1]
ATGAAACTACGCAATGATACTGACCTCGCCGCCTGGTTAAAGCTGAGCTGCTTGCCAGGCATTGGCGGGGTGAAGATGAA
TAAGCTGCTGAGTAAAGATACGCCAAGCAATATTGTCGGATACTCAACTGAGCAGCTTCAGCTTTTGGGTTTTACCACGA
AGCAACTGCAAGCATGGTCTGAGGTCGATAAAGAAGTCGACGCTTGTCTTACTTGGGCTAGCGCCTCATCTCATCATCAT
ATTGTTACTTTGGCGGATACTCTGTATCCCCCACTTCTCAAACAAACGGTCGCTCCACCTCCTTTACTATTTATAAAGGG
AGAAGCGAGTTGTTTGTCTCAACCTCAAATTGCCATGGTCGGCAGCCGTAATGCTAGTGTTGATGGGCTTCAACACGCAC
GTCAGTTCGCTGCAGATTTGGTGAAACATGATCTGATTGTTACCAGTGGTTTGGCTTTGGGTATCGATGGACACGCTCAT
GATGGTGCTTTGCAAGCGGACGGTAAAACCATTGCGGTATTGGGTTCAGGGTTAGAGCAAGTTTATCCAGCCCGTCACCG
AGGTTTAGCGCGGCGAGTGATGGAAAACGGTGCGTTAGTCTCTGAGTTTCGCCCAGATGCAAAACCTCGAGCAGAAAACT
TCCCACGACGTAATCGAATCATTAGTGGTTTGTCGCTTGGCGTGTTGGTTGTCGAAGCAGCAGAAAAGAGTGGCTCATTA
ATCACCGCTCGCTACGCTCTTGAGCAAGACCGTGAAGTTTTCGCTATACCAGCTTCGATTAATGCTCCCAATGCCAGTGG
TGGTAATCAGTTGATTCGTAATGGGGCTTGTCTCGTACAAAACACTCAAGAGGTGTTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTGGATTTATTTTCTACGGCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

92.683

100

0.927
  dprA Vibrio cholerae strain A1552

58.649

100

0.588
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.472
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Legionella pneumophila strain ERS1305867

49.662

80.217

0.398
  dprA Neisseria meningitidis strain C311

37.275

100

0.393
  dprA Neisseria meningitidis MC58

37.275

100

0.393
  dprA Neisseria gonorrhoeae strain FA1090

35.659

100

0.374
  dprA Neisseria gonorrhoeae MS11

35.659

100

0.374

Multiple sequence alignment