Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACK28Q_RS23255 Genome accession   NZ_CP176762
Coordinates   5032958..5033590 (-) Length   210 a.a.
NCBI ID   WP_014494833.1    Uniprot ID   A0A0A3YMQ2
Organism   Bradyrhizobium japonicum strain DSM 3014     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5027958..5038590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK28Q_RS23240 (ACK28Q_23240) - 5028003..5028407 (-) 405 WP_014494836.1 GFA family protein -
  ACK28Q_RS23245 (ACK28Q_23245) lon 5028477..5030900 (-) 2424 WP_014494835.1 endopeptidase La -
  ACK28Q_RS23250 (ACK28Q_23250) clpX 5031225..5032496 (-) 1272 WP_014494834.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACK28Q_RS23255 (ACK28Q_23255) clpP 5032958..5033590 (-) 633 WP_014494833.1 ATP-dependent Clp protease proteolytic subunit Regulator
  ACK28Q_RS23260 (ACK28Q_23260) tig 5033894..5035255 (-) 1362 WP_014494832.1 trigger factor -
  ACK28Q_RS23270 (ACK28Q_23270) - 5035668..5037008 (+) 1341 WP_028170227.1 multicopper oxidase family protein -
  ACK28Q_RS23275 (ACK28Q_23275) - 5037051..5037485 (-) 435 WP_014494830.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23407.03 Da        Isoelectric Point: 5.7683

>NTDB_id=968759 ACK28Q_RS23255 WP_014494833.1 5032958..5033590(-) (clpP) [Bradyrhizobium japonicum strain DSM 3014]
MRDPVETYMNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEISMYINSPGGVVT
SGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNARIMVHQPSGGFQGQATDIMLHAQEILNLKKRLNE
IYVKHTGQTYKTIEDALERDKFLTANDAKEFGLVDKVIDKRAEEPAAKPQ

Nucleotide


Download         Length: 633 bp        

>NTDB_id=968759 ACK28Q_RS23255 WP_014494833.1 5032958..5033590(-) (clpP) [Bradyrhizobium japonicum strain DSM 3014]
ATGCGCGATCCGGTTGAAACCTATATGAACCTCGTGCCCATGGTGGTCGAGCAGACCAACCGTGGCGAGCGCGCCTACGA
CATCTTTTCGCGCCTGTTGAAGGAGCGCATCATTTTCCTGACCGGGCCGGTCGAGGACGGCATGTCGACGCTGGTGGTCG
CACAGCTCCTGTTCCTTGAAGCGGAAAATCCGAAGAAGGAAATCTCGATGTACATCAACTCGCCGGGTGGCGTGGTGACG
TCGGGCCTCGCGATCTACGACACCATGCAGTTCATCCGCCCGCCGGTCTCGACGCTGTGCACGGGCCAGGCCGCCTCGAT
GGGCTCGCTGCTGCTCGCCGCCGGCGAGAAGGACATGCGCTTCTCGCTGCCGAACGCGCGCATCATGGTGCATCAGCCCT
CCGGCGGCTTCCAGGGCCAGGCCACCGACATCATGCTGCACGCGCAGGAAATCCTGAACCTGAAGAAGCGGCTCAACGAG
ATCTACGTGAAGCACACCGGTCAGACCTACAAGACGATCGAGGACGCGCTGGAACGCGACAAGTTCCTGACCGCGAACGA
CGCCAAGGAGTTCGGCCTGGTCGACAAGGTCATCGACAAGCGCGCCGAGGAGCCGGCGGCGAAACCGCAGTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3YMQ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.474

90.476

0.538
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.421

90.476

0.529
  clpP Lactococcus lactis subsp. cremoris KW2

48.969

92.381

0.452
  clpP Streptococcus pyogenes MGAS315

48.168

90.952

0.438
  clpP Streptococcus pyogenes JRS4

48.168

90.952

0.438
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

47.423

92.381

0.438
  clpP Streptococcus mutans UA159

47.396

91.429

0.433
  clpP Streptococcus pneumoniae D39

47.368

90.476

0.429
  clpP Streptococcus pneumoniae TIGR4

47.368

90.476

0.429
  clpP Streptococcus pneumoniae R6

47.368

90.476

0.429
  clpP Streptococcus pneumoniae Rx1

47.368

90.476

0.429
  clpP Streptococcus thermophilus LMG 18311

46.316

90.476

0.419
  clpP Streptococcus thermophilus LMD-9

46.316

90.476

0.419