Detailed information NTG0968758

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACK28Q_RS23250
• Genome accession: NZ_CP176762
• Coordinates: 5031225..5032496 (-)
• Length: 423 a.a.
• NCBI ID: WP_014494834.1
• Uniprot ID: A0ABY7MCD4
• Organism: Bradyrhizobium japonicum strain DSM 3014
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5026225..5037496

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK28Q_RS23225 (ACK28Q_23225)	-	5026367..5027227 (-)	861	WP_014494838.1	class I SAM-dependent methyltransferase	-
ACK28Q_RS23230 (ACK28Q_23230)	-	5027407..5027598 (-)	192	WP_014494837.1	hypothetical protein	-
ACK28Q_RS23240 (ACK28Q_23240)	-	5028003..5028407 (-)	405	WP_014494836.1	GFA family protein	-
ACK28Q_RS23245 (ACK28Q_23245)	lon	5028477..5030900 (-)	2424	WP_014494835.1	endopeptidase La	-
ACK28Q_RS23250 (ACK28Q_23250)	clpX	5031225..5032496 (-)	1272	WP_014494834.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ACK28Q_RS23255 (ACK28Q_23255)	clpP	5032958..5033590 (-)	633	WP_014494833.1	ATP-dependent Clp protease proteolytic subunit	Regulator
ACK28Q_RS23260 (ACK28Q_23260)	tig	5033894..5035255 (-)	1362	WP_014494832.1	trigger factor	-
ACK28Q_RS23270 (ACK28Q_23270)	-	5035668..5037008 (+)	1341	WP_028170227.1	multicopper oxidase family protein	-
ACK28Q_RS23275 (ACK28Q_23275)	-	5037051..5037485 (-)	435	WP_014494830.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 423 a.a.
• Molecular weight: 46576.40 Da
• Isoelectric Point: 5.5461

>NTDB_id=968758 ACK28Q_RS23250 WP_014494834.1 5031225..5032496(-) (clpX) [Bradyrhizobium japonicum strain DSM 3014]
MSKVGTSDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKSSLVKSRDGIPTPKEICKVLDDYVIGQ
SHAKKVLSVAVHNHYKRLNHQTKHNDVELAKSNILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENI
ILKLLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQVDTT
NILFICGGAFAGLEKIISARGRSTSIGFAAQVLAPEDRRTGEIFRHVEPEDLLKYGLIPEFVGRLPVVATLEDLDETSLK
KILTEPKNALVKQYQRLFEMENIELTFADEALGAVARKAIERKTGARGLRSILEAILLETMFDLPGLEGVEEVVISREVV
EGTARPLYIYADRSDRAVENASA

Nucleotide

• Length: 1272 bp

>NTDB_id=968758 ACK28Q_RS23250 WP_014494834.1 5031225..5032496(-) (clpX) [Bradyrhizobium japonicum strain DSM 3014]
ATGAGTAAGGTCGGCACGAGCGACTCCAAGAACACGCTGTATTGCTCGTTCTGCGGCAAGAGCCAGCACGAAGTCCGCAA
ACTGATCGCGGGTCCCACGGTCTTCATCTGCGACGAGTGCGTTGAGCTCTGCATGGACATCATCCGCGAGGAGAACAAAT
CCTCGCTCGTGAAGTCGCGCGACGGCATTCCGACGCCGAAGGAAATCTGCAAGGTCCTGGACGATTACGTCATCGGCCAG
AGCCATGCGAAGAAGGTCCTGTCGGTCGCGGTGCACAATCACTACAAGCGCCTCAACCACCAGACCAAGCACAACGACGT
CGAGCTCGCGAAGTCGAACATCCTGCTGATCGGTCCGACCGGTTCGGGCAAGACGCTGCTCGCGCAGACGCTCGCCCGCA
TCCTGGACGTGCCGTTCACGATGGCCGATGCAACGACGCTGACCGAAGCCGGCTATGTCGGCGAGGACGTCGAGAACATC
ATCCTGAAGCTGCTCCAGGCCGCCGACTACAATGTCGAGCGCGCCCAGCGCGGCATCGTCTACATCGACGAAATCGACAA
GATCAGCCGCAAGTCCGACAATCCCTCGATCACGCGCGACGTGTCGGGTGAGGGCGTGCAGCAGGCGTTGCTGAAGATCA
TGGAAGGCACGGTGGCTTCGGTCCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAGTTCCTGCAGGTGGATACCACC
AACATCCTGTTCATCTGCGGCGGTGCGTTCGCCGGCCTCGAGAAGATCATCTCGGCGCGCGGGCGGTCGACCTCGATCGG
CTTCGCCGCCCAGGTGCTGGCGCCGGAGGATCGCCGTACCGGCGAGATATTCCGTCACGTCGAGCCTGAGGACCTCCTGA
AGTACGGCCTCATCCCCGAATTCGTCGGCCGTCTGCCGGTCGTGGCGACCCTCGAGGATCTGGACGAGACCTCGCTGAAG
AAGATCCTCACCGAGCCGAAGAACGCGCTGGTGAAACAGTACCAGCGGCTGTTCGAGATGGAGAACATCGAGCTGACCTT
CGCCGACGAGGCGCTTGGCGCGGTCGCCCGCAAAGCGATCGAGCGCAAGACCGGCGCGCGTGGTCTGCGTTCGATCCTCG
AGGCGATCCTGCTCGAGACCATGTTCGACCTGCCGGGCCTGGAAGGTGTGGAAGAAGTCGTGATTTCGCGCGAAGTCGTG
GAAGGCACGGCCCGTCCGCTCTACATCTACGCCGATCGGTCCGATCGCGCAGTCGAGAACGCCAGCGCCTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (13-50)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (314-385)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.728	95.745	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.062	95.745	0.527