Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OO778_RS16430 Genome accession   NZ_AP026765
Coordinates   3482024..3483133 (-) Length   369 a.a.
NCBI ID   WP_074190043.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A16     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3477024..3488133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS16400 (VspSTUT16_30730) hemF 3477485..3478402 (-) 918 WP_005394013.1 oxygen-dependent coproporphyrinogen oxidase -
  OO778_RS16405 (VspSTUT16_30740) - 3478450..3479007 (-) 558 WP_053815514.1 L-threonylcarbamoyladenylate synthase -
  OO778_RS16410 (VspSTUT16_30750) purE 3479207..3479692 (+) 486 WP_074190040.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OO778_RS16415 (VspSTUT16_30760) - 3479697..3480824 (+) 1128 WP_074190041.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OO778_RS16420 (VspSTUT16_30770) - 3480894..3481463 (-) 570 WP_104971082.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  OO778_RS16425 (VspSTUT16_30790) - 3481542..3482021 (-) 480 WP_005379074.1 DUF494 family protein -
  OO778_RS16430 (VspSTUT16_30800) dprA 3482024..3483133 (-) 1110 WP_074190043.1 DNA-processing protein DprA Machinery gene
  OO778_RS16435 (VspSTUT16_30810) - 3483117..3484211 (-) 1095 WP_264910432.1 LysM peptidoglycan-binding domain-containing protein -
  OO778_RS16440 (VspSTUT16_30820) def 3484350..3484868 (+) 519 WP_005379068.1 peptide deformylase -
  OO778_RS16445 (VspSTUT16_30830) fmt 3484902..3485849 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  OO778_RS16450 (VspSTUT16_30840) rsmB 3485930..3487213 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40120.91 Da        Isoelectric Point: 7.0592

>NTDB_id=96868 OO778_RS16430 WP_074190043.1 3482024..3483133(-) (dprA) [Vibrio sp. STUT-A16]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWFEASTNHH
ILTLTDPLYPPQLKQIVAPPPLLFVEGSPTFLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLAIGIDGHAH
DGALQAKGKTIAVLGSGLANIYPARHRSLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNEEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=96868 OO778_RS16430 WP_074190043.1 3482024..3483133(-) (dprA) [Vibrio sp. STUT-A16]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGGGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCGCGTAACATCGTAAACTTCTCTCCCGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTTGATGCCTGTTTAAGTTGGTTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCTTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCTCCGTTGTTATTTGTTGAGGG
GAGTCCCACCTTTTTATCGCAACCACAAATTGCCATGGTGGGTAGCCGAAATGCGAGTATTGATGGCTTACAGCATGCAC
GCCACTTTGCCGCCGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTATAGGCATTGATGGCCATGCGCAT
GATGGTGCGTTGCAAGCAAAAGGTAAGACGATTGCGGTGCTAGGATCTGGTTTAGCAAATATTTATCCAGCACGTCATCG
TAGTTTAGCGCAACGTGTTATTGAACACGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGAAGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.114

100

0.821
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.774

100

0.472
  dprA Legionella pneumophila strain ERS1305867

44.044

97.832

0.431
  dprA Haemophilus influenzae Rd KW20

44.669

94.038

0.42
  dprA Neisseria meningitidis strain C311

36.203

100

0.388
  dprA Neisseria meningitidis MC58

36.203

100

0.388
  dprA Neisseria gonorrhoeae MS11

35.369

100

0.377
  dprA Neisseria gonorrhoeae strain FA1090

35.115

100

0.374

Multiple sequence alignment