Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OO778_RS02980 Genome accession   NZ_AP026765
Coordinates   612491..613714 (-) Length   407 a.a.
NCBI ID   WP_248381230.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A16     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607491..618714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS02945 (VspSTUT16_04980) rimM 607646..608194 (+) 549 WP_005379964.1 ribosome maturation factor RimM -
  OO778_RS02950 (VspSTUT16_04990) trmD 608222..608965 (+) 744 WP_005425529.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OO778_RS02955 (VspSTUT16_05000) rplS 609007..609360 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  OO778_RS02960 (VspSTUT16_05010) yacG 609827..610027 (-) 201 WP_264910666.1 DNA gyrase inhibitor YacG -
  OO778_RS02965 (VspSTUT16_05020) zapD 610174..610914 (-) 741 WP_012841416.1 cell division protein ZapD -
  OO778_RS02970 (VspSTUT16_05030) coaE 610942..611556 (-) 615 WP_047008979.1 dephospho-CoA kinase -
  OO778_RS02975 (VspSTUT16_05040) pilD 611557..612426 (-) 870 WP_258614053.1 A24 family peptidase Machinery gene
  OO778_RS02980 (VspSTUT16_05050) pilC 612491..613714 (-) 1224 WP_248381230.1 type II secretion system F family protein Machinery gene
  OO778_RS02985 (VspSTUT16_05060) pilB 613738..615423 (-) 1686 WP_258614054.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OO778_RS02990 (VspSTUT16_05070) - 615426..615911 (-) 486 WP_025768185.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OO778_RS02995 (VspSTUT16_05080) nadC 616174..617061 (-) 888 WP_258614056.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OO778_RS03000 (VspSTUT16_05090) ampD 617154..617705 (+) 552 WP_005396682.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45340.52 Da        Isoelectric Point: 10.3992

>NTDB_id=96848 OO778_RS02980 WP_248381230.1 612491..613714(-) (pilC) [Vibrio sp. STUT-A16]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSNISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RILSKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=96848 OO778_RS02980 WP_248381230.1 612491..613714(-) (pilC) [Vibrio sp. STUT-A16]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACGTCTGGACAAAC
CCTCGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAACACATCAAGATCAAGAAGTTAAAGAAAAGCAATA
TCTCGTTTCTAACTAAACTCAGCCATCGCGTGAAAGGCAGAGACATCACGGTGTTTACCCGGCAAATTTCGACGATGTTG
ATAACCGGTGTCCCCTTAGTTCAGGCTTTAAAATTGGTATCAGAAAACCACAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAAGCGGGTACGCCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGACCTTATCGCCACAGGTGAGCAATCCGGTAACTTAGCGGAAGTGTTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAACAACTCCGTGCGAAAGTGATCAAAGCCCTGATTTACCCAGCCATGGTAGTGCTAGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTCGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCTTGGTTTACCAGGC
AAGTGTTGGATCTTTCCGCCTGGACACAAAACTGGAGCCCCTTTATAGCACTAGGCTCTATCAGTCTATTCATCTCGGCG
AGAATCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAATTTCCTGTTCTGGGCCCTGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGTATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTTGCCATGCGTAATTGTAATGTGTTCCCTGAATTGGTGTTACAAATGGTTATGATCGGTGAAGAATC
TGGTCGACTTGACGACATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGACAACACCGTCGACAACCTTAGTA
AAATCCTAGAGCCGCTAATTATCGTTTTTTTAGGCATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.978

100

0.87
  pilC Vibrio cholerae strain A1552

73.529

100

0.737
  pilC Acinetobacter baylyi ADP1

43.392

98.526

0.428
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilG Neisseria gonorrhoeae MS11

40.299

98.771

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.297

0.396
  pilG Neisseria meningitidis 44/76-A

40.05

98.771

0.396

Multiple sequence alignment