Detailed information NTG0096847

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OO778_RS02975
• Genome accession: NZ_AP026765
• Coordinates: 611557..612426 (-)
• Length: 289 a.a.
• NCBI ID: WP_258614053.1
• Uniprot ID: -
• Organism: Vibrio sp. STUT-A16
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 606557..617426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OO778_RS02940 (VspSTUT16_04970)	rpsP	607368..607616 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
OO778_RS02945 (VspSTUT16_04980)	rimM	607646..608194 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
OO778_RS02950 (VspSTUT16_04990)	trmD	608222..608965 (+)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OO778_RS02955 (VspSTUT16_05000)	rplS	609007..609360 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
OO778_RS02960 (VspSTUT16_05010)	yacG	609827..610027 (-)	201	WP_264910666.1	DNA gyrase inhibitor YacG	-
OO778_RS02965 (VspSTUT16_05020)	zapD	610174..610914 (-)	741	WP_012841416.1	cell division protein ZapD	-
OO778_RS02970 (VspSTUT16_05030)	coaE	610942..611556 (-)	615	WP_047008979.1	dephospho-CoA kinase	-
OO778_RS02975 (VspSTUT16_05040)	pilD	611557..612426 (-)	870	WP_258614053.1	A24 family peptidase	Machinery gene
OO778_RS02980 (VspSTUT16_05050)	pilC	612491..613714 (-)	1224	WP_248381230.1	type II secretion system F family protein	Machinery gene
OO778_RS02985 (VspSTUT16_05060)	pilB	613738..615423 (-)	1686	WP_258614054.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OO778_RS02990 (VspSTUT16_05070)	-	615426..615911 (-)	486	WP_025768185.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OO778_RS02995 (VspSTUT16_05080)	nadC	616174..617061 (-)	888	WP_258614056.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32509.63 Da
• Isoelectric Point: 6.4408

>NTDB_id=96847 OO778_RS02975 WP_258614053.1 611557..612426(-) (pilD) [Vibrio sp. STUT-A16]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPQEVLTLSVPRSSCQKCATPIRVR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=96847 OO778_RS02975 WP_258614053.1 611557..612426(-) (pilD) [Vibrio sp. STUT-A16]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTCAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTGTTCGA
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTTCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.311	100	0.903
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Acinetobacter nosocomialis M2	52.222	93.426	0.488
pilD	Neisseria gonorrhoeae MS11	48.551	95.502	0.464