Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OO774_RS15480 Genome accession   NZ_AP026763
Coordinates   3322542..3323651 (-) Length   369 a.a.
NCBI ID   WP_264903471.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3317542..3328651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS15450 (VspSTUT11_29250) hemF 3317995..3318912 (-) 918 WP_020333539.1 oxygen-dependent coproporphyrinogen oxidase -
  OO774_RS15455 (VspSTUT11_29260) - 3318961..3319518 (-) 558 WP_014233380.1 L-threonylcarbamoyladenylate synthase -
  OO774_RS15460 (VspSTUT11_29270) purE 3319723..3320208 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OO774_RS15465 (VspSTUT11_29280) - 3320213..3321340 (+) 1128 WP_264903469.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OO774_RS15470 (VspSTUT11_29290) - 3321408..3321977 (-) 570 WP_264903470.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  OO774_RS15475 (VspSTUT11_29300) - 3322060..3322539 (-) 480 WP_269469170.1 DUF494 family protein -
  OO774_RS15480 (VspSTUT11_29310) dprA 3322542..3323651 (-) 1110 WP_264903471.1 DNA-processing protein DprA Machinery gene
  OO774_RS15485 (VspSTUT11_29320) - 3323635..3324729 (-) 1095 WP_264903472.1 LysM peptidoglycan-binding domain-containing protein -
  OO774_RS15490 (VspSTUT11_29330) def 3324868..3325386 (+) 519 WP_264903473.1 peptide deformylase -
  OO774_RS15495 (VspSTUT11_29340) fmt 3325420..3326367 (+) 948 WP_264903474.1 methionyl-tRNA formyltransferase -
  OO774_RS15500 (VspSTUT11_29350) rsmB 3326450..3327733 (+) 1284 WP_264903475.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39885.71 Da        Isoelectric Point: 6.7172

>NTDB_id=96826 OO774_RS15480 WP_264903471.1 3322542..3323651(-) (dprA) [Vibrio sp. STUT-A11]
MKPLNDSDLVAWLKLSCLPGVGGVKLNQLLAKDTPRNIINSSHEYLQCLGLSQKQLQAWASVDKEVEACLNWKELASNHH
ILTLDDPLYPPLLKQIVAPPPLLFLQGDPTCLSQPQIAMVGSRNASVDGLQYARHFAADFVNNDLVVTSGLALGIDGHAH
DGALQAGGRTIAVLGSGLAHIYPARHRGLAQRVAESGALISEFRPNAKPRPDHFPRRNRIISGLSLGVFVVEAAEKSGSL
ITARYALEQGREVFALPASINAKNASGGNHLIRNGACLVEKTKDVLDEIQSLLDWSVNQSRDLFSTLIVEEELPFPQLLA
NVGNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=96826 OO774_RS15480 WP_264903471.1 3322542..3323651(-) (dprA) [Vibrio sp. STUT-A11]
ATGAAGCCACTCAATGATAGTGACCTTGTTGCCTGGCTAAAGCTGAGCTGCTTGCCAGGCGTTGGCGGGGTCAAACTGAA
TCAGTTACTCGCTAAAGATACGCCTCGAAACATCATCAACTCCTCTCATGAATACCTGCAGTGCCTTGGATTAAGTCAGA
AGCAACTTCAGGCCTGGGCATCGGTCGATAAAGAAGTTGAAGCTTGCCTCAATTGGAAAGAGCTCGCTTCGAATCACCAT
ATTCTGACTTTAGATGATCCGCTTTACCCTCCGCTACTTAAACAGATTGTTGCACCGCCACCGCTGTTGTTTTTGCAAGG
CGATCCTACGTGTTTATCTCAGCCTCAGATTGCTATGGTGGGAAGCCGTAACGCGAGTGTTGACGGATTGCAGTACGCTC
GTCACTTTGCCGCAGACTTTGTTAATAATGATCTCGTTGTGACCAGTGGACTCGCTTTGGGCATTGATGGTCATGCGCAT
GACGGAGCGTTGCAAGCGGGAGGAAGGACGATTGCTGTGCTTGGATCCGGCTTAGCGCATATTTATCCAGCCCGGCACCG
TGGGTTGGCACAGCGCGTCGCAGAAAGTGGTGCACTGATTTCAGAATTTCGCCCAAATGCAAAGCCAAGGCCGGATCACT
TTCCACGTCGCAACCGAATTATTAGTGGGTTATCTCTGGGGGTGTTCGTTGTCGAAGCGGCAGAGAAAAGCGGTTCTTTA
ATTACGGCGCGTTATGCGCTTGAGCAAGGACGAGAAGTGTTTGCTCTGCCTGCTTCTATTAATGCGAAAAATGCCAGTGG
CGGAAATCATTTGATTCGCAATGGTGCTTGCCTCGTAGAAAAGACCAAAGATGTACTCGATGAAATACAGTCATTGCTTG
ATTGGTCTGTTAATCAGAGCAGAGATTTATTTTCTACCTTAATTGTTGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

81.301

100

0.813
  dprA Vibrio cholerae strain A1552

57.796

100

0.583
  dprA Glaesserella parasuis strain SC1401

44.772

100

0.453
  dprA Haemophilus influenzae Rd KW20

43.529

92.141

0.401
  dprA Legionella pneumophila strain ERS1305867

48.333

81.301

0.393
  dprA Neisseria meningitidis strain C311

34.761

100

0.374
  dprA Neisseria meningitidis MC58

34.761

100

0.374
  dprA Neisseria gonorrhoeae MS11

33.924

100

0.363
  dprA Neisseria gonorrhoeae strain FA1090

33.671

100

0.36

Multiple sequence alignment