Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   MKY27_RS05115 Genome accession   NZ_CP150239
Coordinates   1075604..1076863 (+) Length   419 a.a.
NCBI ID   WP_339198254.1    Uniprot ID   -
Organism   Solibacillus sp. FSL R5-0449     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1070604..1081863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY27_RS05090 (MKY27_05090) - 1071421..1072149 (+) 729 WP_339198249.1 SDR family oxidoreductase -
  MKY27_RS05095 (MKY27_05095) - 1072197..1072454 (+) 258 WP_339175626.1 DUF3243 domain-containing protein -
  MKY27_RS05100 (MKY27_05100) - 1072966..1073754 (+) 789 WP_339175627.1 DUF3388 domain-containing protein -
  MKY27_RS05105 (MKY27_05105) - 1073803..1074705 (+) 903 WP_339198251.1 RodZ domain-containing protein -
  MKY27_RS05110 (MKY27_05110) pgsA 1074752..1075330 (+) 579 WP_339175629.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY27_RS05115 (MKY27_05115) cinA 1075604..1076863 (+) 1260 WP_339198254.1 competence/damage-inducible protein A Machinery gene
  MKY27_RS05120 (MKY27_05120) recA 1077030..1078100 (+) 1071 WP_339175631.1 recombinase RecA Machinery gene
  MKY27_RS05125 (MKY27_05125) - 1078182..1078358 (+) 177 WP_339198257.1 hypothetical protein -
  MKY27_RS05130 (MKY27_05130) rny 1079195..1080748 (+) 1554 WP_339175634.1 ribonuclease Y -

Sequence


Protein


Download         Length: 419 a.a.        Molecular weight: 45826.52 Da        Isoelectric Point: 4.9422

>NTDB_id=967301 MKY27_RS05115 WP_339198254.1 1075604..1076863(+) (cinA) [Solibacillus sp. FSL R5-0449]
MNAEIIAVGSELLLGQIANTNAKFISSQLSELGINVYYHTVVGDNEARLLEAIKIAEQRADVIIFSGGLGPTKDDLTKEA
IAKHLNRTLVFDETALFAIEEFFSKQRRPMTENNRKQALVLDGCDVLLNQHGMAPGMFLKENDRIYILLPGPPKELEPMF
QYETKPKLAALLHDGGVILSHVLRFYGIGEADLETRIQNILEEQTNPTVAPLASDGEVTLRITAKAQNEPQAFRLIELKK
REILDIVGEYYYGVNDESLGFKLVQMLLENELTVSAAESLTAGLFQSELAEVPGVGSALIGGIVTYTKEAKIKHLGVSGE
LLDEYGIVSSECAAAMATQVREKFGTDIGVGLTGAAGPGDHDGQPAGSIWVGIKIGDTEPLTYRLQLSGSRNTNRIRAVK
FTFSYLMRELANKGYKKLI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=967301 MKY27_RS05115 WP_339198254.1 1075604..1076863(+) (cinA) [Solibacillus sp. FSL R5-0449]
ATGAATGCAGAAATAATAGCGGTAGGATCAGAATTATTATTAGGACAGATTGCCAATACGAATGCGAAGTTTATTTCGAG
CCAGCTTTCGGAACTTGGCATTAATGTTTATTATCATACAGTTGTGGGGGATAACGAGGCGCGGCTTTTAGAAGCGATTA
AAATTGCGGAACAGCGCGCGGATGTCATTATCTTCTCGGGTGGCTTAGGCCCGACAAAGGATGATTTAACGAAGGAAGCA
ATAGCGAAACATTTGAATCGCACATTAGTGTTTGATGAAACAGCACTGTTTGCAATTGAAGAATTCTTCTCGAAGCAAAG
ACGACCGATGACGGAAAACAATCGGAAACAGGCACTAGTACTGGATGGCTGTGATGTATTGCTGAACCAGCATGGGATGG
CACCGGGTATGTTTTTAAAGGAAAATGACCGTATTTATATTTTACTGCCAGGTCCGCCAAAAGAGTTAGAGCCGATGTTC
CAGTATGAAACGAAGCCAAAACTGGCGGCACTGCTGCATGACGGCGGCGTTATTTTATCACATGTATTGCGCTTTTATGG
AATCGGTGAAGCAGATCTGGAAACACGTATACAGAACATTTTGGAAGAACAGACAAATCCAACAGTAGCTCCGCTTGCGT
CAGACGGTGAAGTAACATTGCGCATAACGGCAAAAGCGCAAAACGAACCACAGGCATTCCGTTTGATTGAATTGAAGAAA
CGCGAAATTCTCGATATTGTCGGAGAATACTATTACGGTGTAAATGATGAGTCGTTAGGATTCAAGCTTGTGCAAATGCT
TCTTGAAAATGAATTGACGGTTTCCGCTGCCGAAAGTTTAACGGCCGGTCTGTTCCAGTCGGAGCTGGCAGAAGTTCCGG
GTGTCGGGTCCGCATTAATCGGCGGTATCGTAACGTATACGAAAGAAGCGAAAATCAAACATCTCGGAGTTTCGGGTGAA
CTGCTTGACGAATACGGGATTGTCAGCAGTGAATGTGCTGCGGCAATGGCGACACAAGTCCGTGAAAAGTTCGGTACAGA
TATCGGTGTCGGCCTGACAGGTGCTGCCGGACCGGGCGATCATGACGGACAGCCTGCAGGGTCGATCTGGGTTGGGATTA
AGATCGGTGACACAGAGCCGTTGACGTATCGACTGCAATTATCCGGCTCAAGAAATACAAACCGTATCCGTGCAGTGAAG
TTTACGTTCAGCTATTTAATGAGGGAACTGGCGAATAAAGGGTACAAAAAGCTGATTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.095

98.091

0.501

  cinA Streptococcus mutans UA159

43.614

99.045

0.432

  cinA Streptococcus pneumoniae TIGR4

42.417

100

0.427

  cinA Streptococcus pneumoniae Rx1

42.18

100

0.425

  cinA Streptococcus pneumoniae R6

42.18

100

0.425

  cinA Streptococcus pneumoniae D39

41.943

100

0.422

  cinA Streptococcus mitis SK321

44.792

91.647

0.411

  cinA Streptococcus mitis NCTC 12261

44.531

91.647

0.408


Multiple sequence alignment