Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MKY27_RS05120 Genome accession   NZ_CP150239
Coordinates   1077030..1078100 (+) Length   356 a.a.
NCBI ID   WP_339175631.1    Uniprot ID   -
Organism   Solibacillus sp. FSL R5-0449     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1072030..1083100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY27_RS05095 (MKY27_05095) - 1072197..1072454 (+) 258 WP_339175626.1 DUF3243 domain-containing protein -
  MKY27_RS05100 (MKY27_05100) - 1072966..1073754 (+) 789 WP_339175627.1 DUF3388 domain-containing protein -
  MKY27_RS05105 (MKY27_05105) - 1073803..1074705 (+) 903 WP_339198251.1 RodZ domain-containing protein -
  MKY27_RS05110 (MKY27_05110) pgsA 1074752..1075330 (+) 579 WP_339175629.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MKY27_RS05115 (MKY27_05115) cinA 1075604..1076863 (+) 1260 WP_339198254.1 competence/damage-inducible protein A Machinery gene
  MKY27_RS05120 (MKY27_05120) recA 1077030..1078100 (+) 1071 WP_339175631.1 recombinase RecA Machinery gene
  MKY27_RS05125 (MKY27_05125) - 1078182..1078358 (+) 177 WP_339198257.1 hypothetical protein -
  MKY27_RS05130 (MKY27_05130) rny 1079195..1080748 (+) 1554 WP_339175634.1 ribonuclease Y -
  MKY27_RS05135 (MKY27_05135) - 1081124..1082035 (+) 912 WP_339198260.1 ATP-grasp fold amidoligase family protein -
  MKY27_RS05140 (MKY27_05140) - 1082063..1083016 (+) 954 WP_339198263.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38632.72 Da        Isoelectric Point: 4.6547

>NTDB_id=967302 MKY27_RS05120 WP_339175631.1 1077030..1078100(+) (recA) [Solibacillus sp. FSL R5-0449]
MSDRKAALDMALKQIEKQFGKGSVMKLGENSNNKIDTTSSGSIAIDAALGIGGYPRGRIVEVYGPESSGKTTVTLHAIAE
VQANGGTAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTLAIFINQVREKIGVMFGNPETTTGGRALKFYSSIRLEVRRGEAIKQGTEIIGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELDIIQKSGSWYSYNSERIGQGRENVKQFFKENPAIKEEVTEK
IRQHFGIGELGYTIGANDTTDEEELDELELFEDEKE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=967302 MKY27_RS05120 WP_339175631.1 1077030..1078100(+) (recA) [Solibacillus sp. FSL R5-0449]
TTGAGCGATCGTAAAGCAGCATTAGATATGGCGTTAAAACAAATAGAAAAACAATTCGGTAAAGGTTCTGTCATGAAGTT
AGGTGAGAACTCGAATAACAAAATCGATACAACTTCATCAGGCTCTATCGCAATTGATGCAGCATTAGGTATAGGCGGAT
ATCCGCGCGGACGTATTGTAGAAGTTTACGGACCGGAATCATCTGGTAAAACAACGGTTACATTACATGCCATCGCAGAA
GTACAAGCTAACGGCGGTACAGCAGCATTTATCGATGCTGAGCACGCACTTGACCCAGTATATGCGCAAAAATTAGGCGT
TAACATTGACGAATTATTACTATCTCAGCCGGATACAGGTGAACAAGCACTTGAAATCGCGGAAGCTTTAGTACGTTCTG
GCGCGATCGATATTATTGTTATCGACTCTGTAGCAGCATTAGTACCAAAAGCAGAGATCGAAGGCGAAATGGGTGACTCG
CACATGGGTCTTCAAGCGCGTTTAATGTCTCAGGCATTACGTAAATTATCAGGTGTTATCAACAAATCGAATACGCTTGC
TATTTTCATCAACCAAGTACGTGAAAAAATCGGTGTTATGTTCGGTAACCCAGAAACTACTACAGGTGGACGTGCCCTTA
AATTCTACTCTTCTATCCGTTTAGAAGTACGTCGCGGTGAAGCGATTAAGCAAGGTACTGAAATTATCGGTAACAAAACG
AAAATTAAAGTCGTGAAAAACAAAGTAGCACCACCATTCCGTACAGCGGAAGTGGACATTATGTACGGTGAAGGGATTTC
TAAAGAAGGCGAAATCGTCGACATCGGTGCAGAACTGGACATCATCCAAAAGAGCGGTTCTTGGTATTCTTACAACAGCG
AACGAATCGGCCAAGGTCGTGAAAATGTAAAACAATTCTTCAAAGAAAACCCAGCGATCAAAGAAGAAGTAACAGAAAAA
ATCCGTCAACACTTCGGTATCGGTGAACTAGGCTACACAATCGGCGCCAATGATACAACAGACGAAGAAGAACTGGACGA
ACTAGAATTATTCGAAGACGAAAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.263

91.854

0.756
  recA Latilactobacillus sakei subsp. sakei 23K

71.646

92.135

0.66
  recA Neisseria gonorrhoeae MS11

65.33

98.034

0.64
  recA Neisseria gonorrhoeae MS11

65.33

98.034

0.64
  recA Neisseria gonorrhoeae strain FA1090

65.33

98.034

0.64
  recA Streptococcus mutans UA159

65.043

98.034

0.638
  recA Acinetobacter baylyi ADP1

63.429

98.315

0.624
  recA Glaesserella parasuis strain SC1401

62.393

98.596

0.615
  recA Streptococcus pyogenes NZ131

66.768

92.135

0.615
  recA Acinetobacter baumannii D1279779

62.464

98.034

0.612
  recA Streptococcus pneumoniae R6

65.455

92.697

0.607
  recA Streptococcus mitis NCTC 12261

65.455

92.697

0.607
  recA Streptococcus pneumoniae Rx1

65.455

92.697

0.607
  recA Streptococcus pneumoniae D39

65.455

92.697

0.607
  recA Streptococcus pneumoniae TIGR4

65.455

92.697

0.607
  recA Streptococcus mitis SK321

65.152

92.697

0.604
  recA Lactococcus lactis subsp. cremoris KW2

65.152

92.697

0.604
  recA Ralstonia pseudosolanacearum GMI1000

66.562

89.045

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.696

96.067

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

92.416

0.587
  recA Vibrio cholerae strain A1552

64.706

90.73

0.587
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.706

90.73

0.587
  recA Helicobacter pylori strain NCTC11637

63.11

92.135

0.581
  recA Helicobacter pylori 26695

62.805

92.135

0.579
  recA Pseudomonas stutzeri DSM 10701

63.158

90.73

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

89.888

0.551

Multiple sequence alignment