Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACKTSN_RS31845 Genome accession   NZ_CP176503
Coordinates   6743576..6745504 (-) Length   642 a.a.
NCBI ID   WP_409472264.1    Uniprot ID   -
Organism   Streptomyces sp. HC307     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6738576..6750504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSN_RS31830 (ACKTSN_31830) - 6738803..6740068 (+) 1266 WP_409472261.1 NAD(P)/FAD-dependent oxidoreductase -
  ACKTSN_RS31835 (ACKTSN_31835) dnaG 6740207..6742105 (+) 1899 WP_409472262.1 DNA primase -
  ACKTSN_RS31840 (ACKTSN_31840) - 6742211..6743521 (+) 1311 WP_409472263.1 RNA polymerase sigma factor -
  ACKTSN_RS31845 (ACKTSN_31845) rcrQ 6743576..6745504 (-) 1929 WP_409472264.1 ABC transporter ATP-binding protein Regulator
  ACKTSN_RS31850 (ACKTSN_31850) rcrP 6745504..6747237 (-) 1734 WP_409472265.1 ABC transporter ATP-binding protein Regulator
  ACKTSN_RS31855 (ACKTSN_31855) - 6747343..6748797 (-) 1455 WP_409472266.1 FGGY family carbohydrate kinase -
  ACKTSN_RS31860 (ACKTSN_31860) - 6748975..6749280 (-) 306 WP_409472267.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69927.56 Da        Isoelectric Point: 5.3197

>NTDB_id=967302 ACKTSN_RS31845 WP_409472264.1 6743576..6745504(-) (rcrQ) [Streptomyces sp. HC307]
MAGPMGRMMAGTGPENRTIDFKVSGRRLVGRFRPERLTIYALLVCVVVSVGLSVVGPKILGEATDLVFAGIIGREMPVGE
TKEQVLAAMRERGDGDIADMLRSTDFTPGEGIDFAAVGNVLLLALTVFMVAGLLMAVATRLVNRAVNRTMYRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLVMMFWVSWILALVALVTVPLSLYVATFVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAQQFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQLASMANLVQSGVASAERVFELLDAEEQSEDPVPGVRPEQLRGRVALE
GVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGIDIAKMSRDELRSGIGMVLQDT
WLFGGTIAENIAYGASRKVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHADLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=967302 ACKTSN_RS31845 WP_409472264.1 6743576..6745504(-) (rcrQ) [Streptomyces sp. HC307]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACCGGCCCCGAGAACCGCACGATCGACTTCAAGGTGTCGGGCCGGCG
ACTGGTCGGCCGGTTCCGGCCCGAGCGGCTGACGATCTACGCGCTGCTGGTGTGCGTGGTCGTCAGCGTGGGTCTGTCGG
TGGTCGGACCGAAGATCCTCGGCGAGGCCACCGACCTGGTCTTCGCGGGCATCATCGGCCGGGAGATGCCGGTCGGGGAG
ACCAAGGAGCAGGTGCTGGCCGCGATGCGGGAGCGCGGCGACGGTGACATCGCCGACATGCTCCGCAGTACGGACTTCAC
CCCGGGTGAGGGCATCGACTTCGCCGCGGTCGGGAATGTCCTGCTGCTCGCGCTCACCGTGTTCATGGTCGCCGGTCTGC
TGATGGCGGTGGCGACCCGGCTGGTGAACCGGGCGGTCAACCGGACGATGTACCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGTCAGCGCGGCGAGGTCCTCTCCCGGGCCACCAACGACATCGACAA
CATCGGCCAGACGCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGCTGCTGACCATCATCGGTGTGCTGGTGATGATGT
TCTGGGTGTCGTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCCCTGTACGTCGCGACGTTCGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGTGGGTTGAGGGTCGCCTCGGGTTCCCTGTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCACTGACACAGCTCGCGTCGATGGCGAACCTGGTGCAGTCCGGGGTCGCCTCCGCCGAGCGCGTCTTCGAAC
TCCTCGACGCCGAGGAGCAGTCGGAGGATCCGGTGCCGGGGGTACGGCCGGAGCAGCTGCGCGGGCGGGTGGCGCTGGAA
GGCGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGACGGTGGAACCCGGGCACACCGTCGC
CATCGTCGGGCCGACGGGAGCGGGCAAGACGACGCTGGTCAATCTGCTCATGCGGTTCTACGAGGTGTCCGGCGGGCGCA
TCACCCTCGACGGGATCGACATCGCGAAGATGTCACGGGACGAACTGCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCCGAGAACATCGCGTACGGCGCCTCGCGGAAGGTCACCCGCGGGGAGATCGAGGAGGC
GGCGCGGGCGGCCCATGCGGACCGGTTCATCCGTACGCTGCCGGACGGGTACGACACCGTGATCGACGACGAGGGGACGG
GGGTCAGTGCGGGTGAGAAGCAGCTGATCACCATTGCGCGGGCGTTTCTGTCCGATCCGGTGATTCTGGTGTTGGACGAG
GCGACGTCGTCGGTCGACACCCGGACTGAAGTGCTGATTCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTT
CGTCATCGCGCACCGTCTGTCGACGATTCGGGACGCGGACACGATTCTGGTGATGGAGAACGGGTCGATCGTCGAGCAGG
GCGCGCATGCGGATCTGCTGGCGGCCGACGGGGCGTATGCGCGTTTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTGGACTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.137

93.146

0.383

Multiple sequence alignment