Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACKTSN_RS31850 Genome accession   NZ_CP176503
Coordinates   6745504..6747237 (-) Length   577 a.a.
NCBI ID   WP_409472265.1    Uniprot ID   -
Organism   Streptomyces sp. HC307     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6740504..6752237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTSN_RS31840 (ACKTSN_31840) - 6742211..6743521 (+) 1311 WP_409472263.1 RNA polymerase sigma factor -
  ACKTSN_RS31845 (ACKTSN_31845) rcrQ 6743576..6745504 (-) 1929 WP_409472264.1 ABC transporter ATP-binding protein Regulator
  ACKTSN_RS31850 (ACKTSN_31850) rcrP 6745504..6747237 (-) 1734 WP_409472265.1 ABC transporter ATP-binding protein Regulator
  ACKTSN_RS31855 (ACKTSN_31855) - 6747343..6748797 (-) 1455 WP_409472266.1 FGGY family carbohydrate kinase -
  ACKTSN_RS31860 (ACKTSN_31860) - 6748975..6749280 (-) 306 WP_409472267.1 YtxH domain-containing protein -
  ACKTSN_RS31880 (ACKTSN_31880) - 6750202..6751173 (+) 972 WP_409472268.1 PstS family phosphate ABC transporter substrate-binding protein -
  ACKTSN_RS31885 (ACKTSN_31885) pstC 6751170..6752090 (+) 921 WP_409472269.1 phosphate ABC transporter permease subunit PstC -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62777.85 Da        Isoelectric Point: 6.3216

>NTDB_id=967303 ACKTSN_RS31850 WP_409472265.1 6745504..6747237(-) (rcrP) [Streptomyces sp. HC307]
MLIRLLRTYLRPYKRPITVLVLLQFLQTCATLYLPTLNADIIDNGVVNGDTGYILSFGALMIGISLAQVVCNIGAVYYGA
RTASALGRDVRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGICVMLIVRRLRPLFRSMQERLDTVNRVLREQITGNRVIRAFVRDEYEQHRFRKANAELTEVSLGAGNLLAL
MFPIVMTVVNVSSIAVVWFGAHRIDSGGMQIGDLTAYLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQDVLDTSSSVVP
PSSPVRELRRHGHLEIRGAGFRYPGAEEPVLKAVDLLARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVR
TVDPQLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKPFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSSLDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=967303 ACKTSN_RS31850 WP_409472265.1 6745504..6747237(-) (rcrP) [Streptomyces sp. HC307]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAAGAGACCGATCACCGTCCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACCCTGAACGCGGACATCATCGACAACGGTGTCGTGAACGGTGACACCGGTTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGGGCCGTGTACTACGGGGCC
CGCACCGCTTCGGCGCTCGGCCGGGACGTGCGGGCCGGCGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGGTGGG
CCACTTCGGCGCCCCTTCGCTGATCACCCGGACCACGAACGACGTCCAGCAGGTCCAGATGCTGGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGTATCGTCCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTGGCCGTCGTGCCGGTGCTGGGCATCTGCGTGATGCTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGTCCATGCA
GGAGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAACAGATCACCGGCAACCGGGTGATCCGGGCCTTCGTGCGGGACG
AGTACGAGCAGCACCGCTTCCGGAAGGCGAACGCCGAGCTGACGGAGGTGTCGCTGGGCGCCGGCAACCTGCTGGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTCAACGTGTCGTCGATCGCGGTGGTGTGGTTCGGGGCCCATCGGATCGACAGCGG
CGGCATGCAGATCGGTGACCTGACCGCGTATCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACGTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCGGAGCGCATCCAGGACGTGCTCGACACGTCGTCGAGTGTGGTCCCG
CCGAGCAGCCCGGTCCGGGAGCTGCGCCGCCACGGCCATCTGGAGATCCGCGGGGCCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGGCCGTCGACCTTCTCGCGCGGCCGGGTGAGACGACCGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCGACGCTGCTGGGGCTGGTGCCGCGGCTGTTCGACGCGACGGACGGCGAGGTGCTCGTCGACGGGGTGGACGTACGG
ACCGTCGACCCGCAGCTGCTGGCCAGGACGGTCGGGCTGGTGCCGCAGAAGCCGTATCTCTTCGCGGGGACCGTGGCGAC
GAACCTGCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCGAAACCCTTCG
TGGAGCGGCTGGAGGGCGGCCTTGACGCGCCCATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGGCAGCGGCTG
GCGATCGCGCGGACCCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCTCCCTCGACTACGCCACCGA
CGCGGCGCTGCGCGCGGCGCTCGGCCGGGAGACCGCGGAGGCGACCGTGGTGATCGTCGCCCAGCGAGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTGCTCGACGAGGGCCGGGTGGTCGGCACCGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.929

97.054

0.378