Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   NYE32_RS09555 Genome accession   NZ_CP150201
Coordinates   2059336..2060436 (-) Length   366 a.a.
NCBI ID   WP_142236643.1    Uniprot ID   -
Organism   Streptococcus sp. FSL R7-0248     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2054336..2065436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS09515 (NYE32_09515) - 2054945..2055142 (-) 198 WP_013991261.1 helix-turn-helix transcriptional regulator -
  NYE32_RS09520 (NYE32_09520) - 2055393..2056586 (-) 1194 WP_073689934.1 acetate kinase -
  NYE32_RS09525 (NYE32_09525) comYH 2056643..2057599 (-) 957 WP_073689935.1 class I SAM-dependent methyltransferase Machinery gene
  NYE32_RS09530 (NYE32_09530) comGG 2057644..2057961 (-) 318 WP_060973072.1 competence type IV pilus minor pilin ComGG -
  NYE32_RS09535 (NYE32_09535) comYF 2057939..2058376 (-) 438 WP_037600123.1 competence type IV pilus minor pilin ComGF Machinery gene
  NYE32_RS09540 (NYE32_09540) comGE 2058363..2058653 (-) 291 WP_073689936.1 competence type IV pilus minor pilin ComGE -
  NYE32_RS09545 (NYE32_09545) comYD 2058625..2059053 (-) 429 WP_253183867.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYE32_RS09550 (NYE32_09550) comYC 2059013..2059339 (-) 327 WP_070576715.1 competence type IV pilus major pilin ComGC Machinery gene
  NYE32_RS09555 (NYE32_09555) comYB 2059336..2060436 (-) 1101 WP_142236643.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYE32_RS09560 (NYE32_09560) comYA 2060318..2061259 (-) 942 WP_002885658.1 competence type IV pilus ATPase ComGA Machinery gene
  NYE32_RS09565 (NYE32_09565) - 2061340..2061702 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41614.62 Da        Isoelectric Point: 10.0357

>NTDB_id=966198 NYE32_RS09555 WP_142236643.1 2059336..2060436(-) (comYB) [Streptococcus sp. FSL R7-0248]
MPVKISKAIRQPAGTNSWKAWFNKDISLKGISKGKKLKINQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKESSLSLM
KASLMRGDRLDQMFASVGFSDNIVTQIALADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKDNWAVQLVQIFPQLFFVGLCGLLVLSLILYLWVKHQPALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGIDLLDLVSLMQEQKSKLFRELGADLEEALMLGQSFPDRIATHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QAFFNRLNKATTFVQPLIFVIVAVVIVMIYAAMLLPMYQNMEGMIS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=966198 NYE32_RS09555 WP_142236643.1 2059336..2060436(-) (comYB) [Streptococcus sp. FSL R7-0248]
TTGCCAGTGAAAATTTCCAAAGCCATTCGTCAACCAGCTGGAACCAACAGTTGGAAGGCTTGGTTCAACAAGGATATCTC
ACTGAAGGGGATATCCAAGGGGAAAAAATTAAAGATTAATCAGCAAGTCAAGGTTATCCAGCTTTTCAAACAACTTCTAA
AGGCAGGGTTTACTTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGTTGAAAGAATCGTCATTATCTCTTATG
AAAGCAAGCTTAATGCGAGGCGACAGGCTAGACCAGATGTTTGCGTCAGTGGGTTTTTCGGACAATATTGTTACTCAGAT
TGCCCTTGCTGATAAGCACGGTAATCTTCTAGGGAGTTTAACCAAGATTGAAACCTACATGCTTCGCATGACCAAGGTTC
GTAAGAAACTCATGGAGGTAGCGACCTACCCTATCCTACTCCTGGGTTTCCTGATTCTGATTATGTTAGGACTTAAAAAT
TATCTTTTGCCTCAACTGTTAGAGGGTGATGGTAAGGATAATTGGGCTGTACAGTTGGTTCAAATCTTTCCCCAGCTCTT
CTTTGTGGGTTTGTGTGGACTTCTTGTATTAAGCTTAATTCTTTATCTATGGGTCAAACACCAGCCAGCCCTTGTCTTTT
ATCGACGAATGGCAAAAATCCCTTTCATAGGCCAAACTGTCAGGCTATATACGACCGCCTATTATGCTAGGGAATGGGGA
AATCTCTTAGGACAAGGCATTGACCTGTTAGACTTGGTTTCTCTTATGCAAGAGCAAAAGTCCAAGCTCTTTCGTGAGCT
GGGGGCTGATTTAGAAGAGGCCTTGATGCTAGGACAGAGTTTTCCTGACCGTATTGCTACTCACCCTTTTTTCACTAAGG
AACTATCCTTGATTATTGCTTATGGAGAGGCTAATGCTAGGTTGGGCTATGAGTTAGAAGTCTATGCTGAAGAGGTTTGG
CAGGCTTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCTGTCGTGATTGT
AATGATCTATGCAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATATCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

55.394

93.716

0.519
  comYB Streptococcus mutans UA159

55.394

93.716

0.519
  comGB/cglB Streptococcus mitis NCTC 12261

50.432

94.809

0.478
  comYB Streptococcus gordonii str. Challis substr. CH1

51.02

93.716

0.478
  comGB/cglB Streptococcus mitis SK321

50.737

92.623

0.47
  comGB/cglB Streptococcus pneumoniae Rx1

49.853

92.623

0.462
  comGB/cglB Streptococcus pneumoniae D39

49.853

92.623

0.462
  comGB/cglB Streptococcus pneumoniae R6

49.853

92.623

0.462
  comGB/cglB Streptococcus pneumoniae TIGR4

49.853

92.623

0.462
  comGB Lactococcus lactis subsp. cremoris KW2

45.758

90.164

0.413

Multiple sequence alignment