Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   NYE32_RS09525 Genome accession   NZ_CP150201
Coordinates   2056643..2057599 (-) Length   318 a.a.
NCBI ID   WP_073689935.1    Uniprot ID   A0AA45HVC7
Organism   Streptococcus sp. FSL R7-0248     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2051643..2062599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE32_RS09495 (NYE32_09495) proC 2052181..2052951 (+) 771 WP_139724400.1 pyrroline-5-carboxylate reductase -
  NYE32_RS09500 (NYE32_09500) - 2052978..2053640 (-) 663 WP_013991258.1 type II CAAX endopeptidase family protein -
  NYE32_RS09505 (NYE32_09505) - 2053753..2054199 (-) 447 WP_013991259.1 hypothetical protein -
  NYE32_RS09510 (NYE32_09510) - 2054277..2054933 (-) 657 WP_064523497.1 type II CAAX endopeptidase family protein -
  NYE32_RS09515 (NYE32_09515) - 2054945..2055142 (-) 198 WP_013991261.1 helix-turn-helix transcriptional regulator -
  NYE32_RS09520 (NYE32_09520) - 2055393..2056586 (-) 1194 WP_073689934.1 acetate kinase -
  NYE32_RS09525 (NYE32_09525) comYH 2056643..2057599 (-) 957 WP_073689935.1 class I SAM-dependent methyltransferase Machinery gene
  NYE32_RS09530 (NYE32_09530) comGG 2057644..2057961 (-) 318 WP_060973072.1 competence type IV pilus minor pilin ComGG -
  NYE32_RS09535 (NYE32_09535) comYF 2057939..2058376 (-) 438 WP_037600123.1 competence type IV pilus minor pilin ComGF Machinery gene
  NYE32_RS09540 (NYE32_09540) comGE 2058363..2058653 (-) 291 WP_073689936.1 competence type IV pilus minor pilin ComGE -
  NYE32_RS09545 (NYE32_09545) comYD 2058625..2059053 (-) 429 WP_253183867.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYE32_RS09550 (NYE32_09550) comYC 2059013..2059339 (-) 327 WP_070576715.1 competence type IV pilus major pilin ComGC Machinery gene
  NYE32_RS09555 (NYE32_09555) comYB 2059336..2060436 (-) 1101 WP_142236643.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYE32_RS09560 (NYE32_09560) comYA 2060318..2061259 (-) 942 WP_002885658.1 competence type IV pilus ATPase ComGA Machinery gene
  NYE32_RS09565 (NYE32_09565) - 2061340..2061702 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35748.63 Da        Isoelectric Point: 4.3440

>NTDB_id=966194 NYE32_RS09525 WP_073689935.1 2056643..2057599(-) (comYH) [Streptococcus sp. FSL R7-0248]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALDLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHSMKSIFVLKKQTENAPETFVYPLSDLQNPEILKDFTDNFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=966194 NYE32_RS09525 WP_073689935.1 2056643..2057599(-) (comYH) [Streptococcus sp. FSL R7-0248]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTATTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCTCTTGATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATTGGATTTATCATTCTTTACCTACTCGAAGGTTTGACCAA
GGACGACCAATTAGATATTTTGGAGATTGGTTCAGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGAATGGAGGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCAAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACACATTCTCAAAGAGAGTGATGTTATTATCAGTGACCTACCTGTTGG
GTATTACCCAAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACCTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGACTTGCTTAAGAAATGGCTATCAGGATATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAGCATGAAGTCTATCTTCGTGCTTAAAAAACAAACTGAAAATGCTCCAGAGACCTTCGTTTATCCACTTAGCG
ATTTGCAAAACCCAGAGATCCTCAAGGATTTTACAGATAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

69.841

99.057

0.692
  comYH Streptococcus mutans UA140

69.841

99.057

0.692

Multiple sequence alignment