Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSQ79_RS00350 Genome accession   NZ_CP150200
Coordinates   59273..60544 (+) Length   423 a.a.
NCBI ID   WP_049527564.1    Uniprot ID   A0AAW7PL42
Organism   Streptococcus sp. FSL W7-1342     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54273..65544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ79_RS00320 (NSQ79_00320) - 54605..55042 (-) 438 WP_045772361.1 LytTR family DNA-binding domain-containing protein -
  NSQ79_RS00325 (NSQ79_00325) - 55221..55526 (+) 306 WP_002886319.1 hypothetical protein -
  NSQ79_RS00330 (NSQ79_00330) mutL 55576..57513 (+) 1938 WP_021143432.1 DNA mismatch repair endonuclease MutL -
  NSQ79_RS00335 (NSQ79_00335) - 57644..57865 (+) 222 WP_002886321.1 hypothetical protein -
  NSQ79_RS00340 (NSQ79_00340) ruvA 58023..58613 (+) 591 WP_002886323.1 Holliday junction branch migration protein RuvA -
  NSQ79_RS00345 (NSQ79_00345) - 58622..59176 (+) 555 WP_014633717.1 DNA-3-methyladenine glycosylase I -
  NSQ79_RS00350 (NSQ79_00350) cinA 59273..60544 (+) 1272 WP_049527564.1 competence/damage-inducible protein A Machinery gene
  NSQ79_RS00355 (NSQ79_00355) recA 60580..61719 (+) 1140 WP_014633715.1 recombinase RecA Machinery gene
  NSQ79_RS00360 (NSQ79_00360) - 61850..62836 (+) 987 WP_339313686.1 IS30 family transposase -
  NSQ79_RS00365 (NSQ79_00365) spx 62974..63372 (+) 399 WP_002886328.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45849.03 Da        Isoelectric Point: 5.1900

>NTDB_id=966066 NSQ79_RS00350 WP_049527564.1 59273..60544(+) (cinA) [Streptococcus sp. FSL W7-1342]
MKAELIAVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLDQASQRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAIPLQNPTGLAVGGIITAQGVTYVVLPGPPSELKPM
VNQELIPALTENHSSLYSRVLRFFGVGESQLVTILKEFIVNQTDPTIAPYAKVGEVTLRLSTKASSQEEADQKLDVLEKQ
IRSTKTLDGKSLSDFIYGYGESNSLAFEAFRLLKHHGKTITAAESLTAGLFQASIADFSGASQVFKGGFVTYSIEEKAKM
LDIPLSQLEEHGVVSHFTAEKMAEGARAKTDSDYGIALTGVAGPDSLEGHPAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQEDNLI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=966066 NSQ79_RS00350 WP_049527564.1 59273..60544(+) (cinA) [Streptococcus sp. FSL W7-1342]
ATGAAAGCTGAATTGATTGCAGTAGGAACTGAAATCCTAACCGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
GAAACTAGCTGAACTAGGAATTGACGTGTATTTTCACACAGCAGTAGGAGATAATGAAAACCGCCTACTTTCAGTTCTTG
ATCAAGCCAGTCAGCGTAGTGATTTAGTCATACTTTGTGGTGGACTTGGCCCTACTGAGGACGACCTAACCAAGCAAACA
CTGGCTAAGTTCTTAGGAAAAGAACTCGTTTTTGATGAGGAAGCTAGTAAAAAACTGGATAGTTTCTTTGCTACTCGTCC
TAAACACACACGAACGCCTAATAATGAACGTCAAGCACAAATTGTTGAGGGGGCTATTCCCTTGCAAAACCCGACAGGTC
TTGCAGTTGGAGGCATCATTACTGCTCAAGGGGTGACCTATGTAGTCTTACCTGGTCCACCAAGTGAACTCAAACCTATG
GTGAATCAAGAACTTATTCCAGCTCTTACAGAGAATCACTCAAGTCTTTATTCGAGAGTCCTAAGATTCTTTGGCGTTGG
AGAAAGTCAATTAGTGACTATTCTGAAGGAGTTTATTGTTAACCAAACGGATCCAACCATAGCTCCATACGCTAAAGTGG
GGGAAGTAACACTTCGCTTGTCAACAAAGGCTTCTTCGCAAGAAGAAGCAGATCAAAAACTAGATGTTTTAGAGAAACAA
ATTCGTTCGACTAAAACTCTAGATGGAAAATCCTTATCTGATTTCATTTATGGATATGGAGAGTCTAATAGTTTAGCCTT
TGAAGCTTTTCGCTTGCTTAAGCACCATGGCAAGACTATCACTGCAGCTGAAAGCCTAACAGCAGGTTTATTTCAGGCTA
GTATTGCTGATTTTTCAGGGGCCTCACAAGTATTTAAAGGTGGATTTGTTACTTATAGCATTGAAGAAAAAGCTAAAATG
TTGGATATTCCCTTGTCGCAACTAGAAGAACATGGTGTTGTCAGTCATTTTACTGCAGAAAAAATGGCTGAAGGTGCTCG
AGCTAAAACAGATAGCGATTATGGAATTGCACTTACCGGTGTAGCTGGACCAGATTCATTAGAAGGACACCCAGCAGGTA
CGGTATTTATTGGTATTGCTGATAGGAATCAAGTAAGGTCAATCAAGGTTGTTATAGGTGGAAGAAGTCGTTCTGATGTT
AGATATATTAGTACCCTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAAGACAACTTGATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(264-415)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

75.418

99.054

0.747
  cinA Streptococcus mitis NCTC 12261

74.702

99.054

0.74
  cinA Streptococcus pneumoniae TIGR4

73.986

99.054

0.733
  cinA Streptococcus pneumoniae Rx1

73.747

99.054

0.73
  cinA Streptococcus pneumoniae R6

73.747

99.054

0.73
  cinA Streptococcus pneumoniae D39

73.508

99.054

0.728
  cinA Streptococcus mutans UA159

71.158

100

0.712
  cinA Streptococcus suis isolate S10

55.048

98.345

0.541
  cinA Bacillus subtilis subsp. subtilis str. 168

44.893

99.527

0.447

Multiple sequence alignment