Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NST06_RS08320 Genome accession   NZ_CP150197
Coordinates   1639584..1640834 (+) Length   416 a.a.
NCBI ID   WP_056766509.1    Uniprot ID   -
Organism   Bacillus sp. FSL P4-0322     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1634584..1645834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST06_RS08295 (NST06_08295) - 1636006..1636734 (+) 729 WP_197172848.1 SDR family oxidoreductase -
  NST06_RS08300 (NST06_08300) - 1636808..1637065 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  NST06_RS08305 (NST06_08305) - 1637197..1637988 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  NST06_RS08310 (NST06_08310) - 1638012..1638911 (+) 900 WP_034623575.1 helix-turn-helix domain-containing protein -
  NST06_RS08315 (NST06_08315) pgsA 1638986..1639567 (+) 582 WP_056766507.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST06_RS08320 (NST06_08320) cinA 1639584..1640834 (+) 1251 WP_056766509.1 competence/damage-inducible protein A Machinery gene
  NST06_RS08325 (NST06_08325) recA 1641013..1642056 (+) 1044 WP_039178719.1 recombinase RecA Machinery gene
  NST06_RS08330 (NST06_08330) - 1642200..1643375 (+) 1176 WP_056766511.1 serine hydrolase domain-containing protein -
  NST06_RS08335 (NST06_08335) rny 1643609..1645171 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45608.69 Da        Isoelectric Point: 4.7944

>NTDB_id=965974 NST06_RS08320 WP_056766509.1 1639584..1640834(+) (cinA) [Bacillus sp. FSL P4-0322]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRVMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=965974 NST06_RS08320 WP_056766509.1 1639584..1640834(+) (cinA) [Bacillus sp. FSL P4-0322]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCGGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACCATTGCGAGCACGCTTGGGAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGTTATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCGGGTATGTTTATTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAGCTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTAGCGCGGGTAGGAGAGTACTTCTACGGATATGGTGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAGCACGGGAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTACTTGGC
TGCCGGGAAGAAACACTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGTAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.422

99.76

0.752
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.651

90.865

0.397

Multiple sequence alignment