Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NST56_RS09565 Genome accession   NZ_CP150195
Coordinates   1849530..1850780 (+) Length   416 a.a.
NCBI ID   WP_339181506.1    Uniprot ID   -
Organism   Bacillus sp. FSL R5-0560     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1844530..1855780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST56_RS09535 (NST56_09535) - 1844622..1845908 (+) 1287 WP_339181497.1 pitrilysin family protein -
  NST56_RS09540 (NST56_09540) - 1845961..1846689 (+) 729 WP_326202407.1 SDR family oxidoreductase -
  NST56_RS09545 (NST56_09545) - 1846769..1847026 (+) 258 WP_029441274.1 DUF3243 domain-containing protein -
  NST56_RS09550 (NST56_09550) - 1847156..1847947 (+) 792 WP_168747870.1 YmfK family protein -
  NST56_RS09555 (NST56_09555) - 1848014..1848880 (+) 867 WP_339182138.1 RodZ family helix-turn-helix domain-containing protein -
  NST56_RS09560 (NST56_09560) pgsA 1848930..1849511 (+) 582 WP_339181504.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NST56_RS09565 (NST56_09565) cinA 1849530..1850780 (+) 1251 WP_339181506.1 competence/damage-inducible protein A Machinery gene
  NST56_RS09570 (NST56_09570) recA 1850953..1851999 (+) 1047 WP_010334307.1 recombinase RecA Machinery gene
  NST56_RS09575 (NST56_09575) - 1852173..1853351 (+) 1179 WP_339181509.1 serine hydrolase domain-containing protein -
  NST56_RS09580 (NST56_09580) rny 1853638..1855200 (+) 1563 WP_010334309.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45428.63 Da        Isoelectric Point: 4.9775

>NTDB_id=965842 NST56_RS09565 WP_339181506.1 1849530..1850780(+) (cinA) [Bacillus sp. FSL R5-0560]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASALFSGGVVCYSNEVKQNVLG
VNKETLDRFGAVSEQCASELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGISADGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=965842 NST56_RS09565 WP_339181506.1 1849530..1850780(+) (cinA) [Bacillus sp. FSL R5-0560]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTAGGTTCAGAGCTCTTGCTTGGTCAGATTGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTGGCAGAAATCGGAGTAAACGTATTCTACCATACAGCAGTCGGTGATAATCCGGAGCGACTGA
AGCAGGTCATCCGCATTGCTGAAGAGCGCTCTGATTTTATTATTTTTTCAGGAGGACTCGGACCGACAAAAGATGATTTA
ACAAAAGAAACGATAGCTAATGTGCTGGGACGCCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAAGCGCTTGTCATCGAAGGATCTGACGTACTGGCAAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAGAGCATGATTCACGCTTTTATATGCTTCTTCCCGGACCGCCGAGTGAATTG
CGTCCGATGTTTGAAAATGAGGCTAAACCGCTTCTTCTTAAAAAGATGGGCTCAAATGAAAAAATTGTGTCAACGGTTCT
TCGCTTCTTCGGTATCGGCGAATCTCAGCTAGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATTG
CTCCGTTGGCAGCGGATGGAGAGGTGACGCTGCGCCTGACAGCGAAACATGCCGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGCTACGACGATACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CAGACCTTAGCGGCGCTTCAGCGTTGTTTTCCGGCGGCGTCGTTTGCTATTCAAACGAAGTGAAGCAAAATGTGCTCGGC
GTCAATAAGGAAACATTGGACCGTTTCGGCGCAGTCAGCGAGCAATGCGCATCTGAGCTCGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTGT
TTATTGGTATTTCTGCAGATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACAGGAATTAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

95.673

100

0.957
  cinA Streptococcus mitis SK321

46.651

100

0.469
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.973

99.279

0.466
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385

Multiple sequence alignment