Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSU16_RS09060 Genome accession   NZ_CP150176
Coordinates   1750052..1751302 (+) Length   416 a.a.
NCBI ID   WP_339192527.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1003     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1745052..1756302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU16_RS09030 (NSU16_09030) - 1745150..1746436 (+) 1287 WP_268446161.1 pitrilysin family protein -
  NSU16_RS09035 (NSU16_09035) - 1746489..1747217 (+) 729 WP_326202407.1 SDR family oxidoreductase -
  NSU16_RS09040 (NSU16_09040) - 1747297..1747554 (+) 258 WP_029441274.1 DUF3243 domain-containing protein -
  NSU16_RS09045 (NSU16_09045) - 1747684..1748475 (+) 792 WP_003220998.1 YmfK family protein -
  NSU16_RS09050 (NSU16_09050) - 1748542..1749402 (+) 861 WP_339192667.1 RodZ family helix-turn-helix domain-containing protein -
  NSU16_RS09055 (NSU16_09055) pgsA 1749452..1750033 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSU16_RS09060 (NSU16_09060) cinA 1750052..1751302 (+) 1251 WP_339192527.1 competence/damage-inducible protein A Machinery gene
  NSU16_RS09065 (NSU16_09065) recA 1751475..1752521 (+) 1047 WP_010334307.1 recombinase RecA Machinery gene
  NSU16_RS09070 (NSU16_09070) - 1752695..1753873 (+) 1179 WP_168747875.1 serine hydrolase domain-containing protein -
  NSU16_RS09075 (NSU16_09075) rny 1754160..1755722 (+) 1563 WP_010334309.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45445.70 Da        Isoelectric Point: 5.1421

>NTDB_id=964997 NSU16_RS09060 WP_339192527.1 1750052..1751302(+) (cinA) [Bacillus sp. FSL K6-1003]
MEFTKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASALFSGGVVCYSNEVKQNVLG
VKKETLDRFGAVSEQCASELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=964997 NSU16_RS09060 WP_339192527.1 1750052..1751302(+) (cinA) [Bacillus sp. FSL K6-1003]
ATGGAATTTACAAAAAAAGCAGAAATTATTGCAGTAGGTTCAGAGCTCTTGCTTGGTCAGATTGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTGGCAGAAATCGGAGTGAACGTATTCTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAGCGCTCTGATTTTATTATTTTTTCAGGAGGGCTCGGACCGACAAAAGATGATTTA
ACAAAAGAAACGATAGCTAATGTGCTGGGACGCCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAAGCGCTTGTCATCGAAGGATCTGACGTACTGGCAAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAGAGCATGATTCACGCTTTTATATGCTTCTTCCCGGACCGCCGAGTGAATTG
CGTCCGATGTTTGAAAATGAGGCTAAACCGCTTCTTCTTAAAAAGATGGGCTCAAATGAAAAAATTGTGTCAACGGTTCT
TCGCTTCTTCGGTATCGGCGAATCTCAGCTAGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATTG
CTCCATTGGCAGCGGATGGAGAGGTGACGCTGCGCCTGACAGCGAAACATGCTGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGCTATGACGATACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CAGATCTTAGCGGCGCTTCAGCGTTGTTTTCCGGCGGCGTCGTTTGCTATTCAAACGAAGTGAAGCAAAATGTACTCGGC
GTCAAAAAGGAAACATTGGACCGTTTCGGCGCAGTCAGCGAGCAATGCGCATCTGAGCTCGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTGT
TTATCGGTATTTCTGCAAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACAGGAATTAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

95.913

100

0.959
  cinA Streptococcus mitis SK321

46.651

100

0.469
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.973

99.279

0.466
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385

Multiple sequence alignment