Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   NYE79_RS01530 Genome accession   NZ_CP150168
Coordinates   270458..272437 (+) Length   659 a.a.
NCBI ID   WP_000749711.1    Uniprot ID   A0A081R276
Organism   Streptococcus sp. FSL W8-0197     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 265458..277437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS01500 (NYE79_01500) - 265903..266133 (+) 231 WP_002892633.1 DUF1146 family protein -
  NYE79_RS01505 (NYE79_01505) murA 266157..267440 (+) 1284 WP_180833558.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NYE79_RS01510 (NYE79_01510) - 267427..267621 (+) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  NYE79_RS01515 (NYE79_01515) endA 267662..268486 (+) 825 WP_339293739.1 DNA/RNA non-specific endonuclease Machinery gene
  NYE79_RS01520 (NYE79_01520) - 268623..269954 (+) 1332 WP_339293740.1 hemolysin family protein -
  NYE79_RS01530 (NYE79_01530) amiA 270458..272437 (+) 1980 WP_000749711.1 peptide ABC transporter substrate-binding protein Regulator
  NYE79_RS01535 (NYE79_01535) amiC 272504..274000 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  NYE79_RS01540 (NYE79_01540) amiD 274000..274926 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  NYE79_RS01545 (NYE79_01545) amiE 274935..276002 (+) 1068 WP_049519748.1 ABC transporter ATP-binding protein Regulator
  NYE79_RS01550 (NYE79_01550) amiF 276013..276942 (+) 930 WP_049519746.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72749.81 Da        Isoelectric Point: 4.7627

>NTDB_id=964591 NYE79_RS01530 WP_000749711.1 270458..272437(+) (amiA) [Streptococcus sp. FSL W8-0197]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYVYTADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADNKSAAKYLAEDSVKGLADYIAGNNKDFASV
GVKAVDDYTLEYTLNKPEPYWNSKLAYSIFWPLNEEFEKSKGSDFGKATDPTSLLYNGPFLLRGLTAKSSIEFVKNENYW
DKDNVHLDKVTLAYYDGSDQESIERNFTSGAYSYARLFPTSSNYSKVEETYKDNIYYTPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPLAVRNLFVKPDFVSAGEKTFGDLVTEKMAAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETVLGEENVVIDIQQITTDE
LQNITYYAASAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAGKETS
DLNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPIISRVVPFSASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=964591 NYE79_RS01530 WP_000749711.1 270458..272437(+) (amiA) [Streptococcus sp. FSL W8-0197]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGAGTTGCTTTATTAGCGGCAGGAGTACTAGCTGCTTGTGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGCTATGTTTATACAGCTGACCCAGAAACGTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGGTCGCCACTTCAAATGGTATCGATGGTCTTTTCACAAACGACAAGTATGGGAATTTAGTTCCT
GCAGTTGCAGAAGACTGGTCAGTTTCAAAAGATGGTTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATGGATGAC
ATCTGATGGCGAAGAGTATGCTGAAGTAACAGCCAAAGACTTTGTAAATGGTTTGAAACACGCAGCTGACAATAAATCAG
CAGCTAAGTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATATAGCTGGAAACAATAAAGATTTTGCTTCAGTC
GGTGTAAAAGCAGTTGATGATTACACCCTTGAATACACTTTGAACAAACCAGAACCATACTGGAACTCTAAGCTGGCCTA
CTCAATCTTCTGGCCATTGAACGAAGAATTTGAAAAATCAAAAGGATCTGATTTTGGTAAAGCGACTGACCCTACATCAT
TGCTTTACAATGGACCATTCTTGCTGAGAGGTTTGACTGCTAAGTCATCTATCGAATTTGTGAAGAATGAAAACTATTGG
GACAAAGACAATGTTCATCTTGATAAAGTAACACTTGCTTACTATGATGGTTCAGATCAAGAATCAATTGAACGTAACTT
TACAAGTGGGGCTTATAGCTATGCCCGTCTCTTCCCAACAAGTTCAAACTACTCTAAGGTAGAAGAAACTTACAAAGACA
ATATTTACTACACTCCATCAGGTCCAGGTATTGGTGGTTTGGGTGTAAATATTGACCGTCAAGGTTACAAATACACTTCT
AAGACAACTGATGAAGAGAAGACTTCTACTAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAGGCTTTGAACTTTGCCTT
TGACCGTACTTCTTACTCAGCACAAATTAATGGTAAGGAAGGTGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCAG
ACTTTGTCTCTGCAGGCGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCGGCTTACGGTGATGAATGGAAGAAT
GTAAACTTTGCGGATGGTCAAGATGGACTTTTCAACGCCGATAAAGCCAAAGCCGAATTTGCCAAAGCTAAAACAGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATCCCAGTAGACCAAACATCTAAAAACTATATTGCACGTATTC
AATCCTTCAAACAATCCGTTGAAACAGTACTTGGAGAAGAAAACGTAGTCATCGATATCCAACAAATCACTACAGATGAA
CTACAGAATATTACATACTACGCAGCTAGCGCAGCGGCAGAAGATTGGGATCTCTCAGGTGCTGTTGGATGGAACCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAAACAACGAATGCTGAACAAACAAAAACCTATATGGGTTACGAAG
GTGCAGATAATGCTGCAGCGGCTCAAGTTGGTTTGAAAGAATACGATAAGCTAGTTGATGAAGCAGGAAAAGAAACAAGC
GACTTGAATGTTCGTTATGAAAAATACGCGGCTGCTCAAGCTTGGTTGACAGATAGTTCACTCTTCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCAATCATTTCTCGTGTTGTGCCATTCTCTGCATCTTACAGTCAATCTGGAGATAAGGGATCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGATTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R276

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.83

100

0.678
  amiA3 Streptococcus thermophilus LMG 18311

67.727

100

0.678
  amiA3 Streptococcus thermophilus LMD-9

67.576

100

0.677

Multiple sequence alignment