Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   NYE79_RS01545 Genome accession   NZ_CP150168
Coordinates   274935..276002 (+) Length   355 a.a.
NCBI ID   WP_049519748.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 269935..281002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS01530 (NYE79_01530) amiA 270458..272437 (+) 1980 WP_000749711.1 peptide ABC transporter substrate-binding protein Regulator
  NYE79_RS01535 (NYE79_01535) amiC 272504..274000 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  NYE79_RS01540 (NYE79_01540) amiD 274000..274926 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  NYE79_RS01545 (NYE79_01545) amiE 274935..276002 (+) 1068 WP_049519748.1 ABC transporter ATP-binding protein Regulator
  NYE79_RS01550 (NYE79_01550) amiF 276013..276942 (+) 930 WP_049519746.1 ATP-binding cassette domain-containing protein Regulator
  NYE79_RS01555 (NYE79_01555) - 277031..278470 (-) 1440 WP_049519745.1 TrkH family potassium uptake protein -
  NYE79_RS01560 (NYE79_01560) trkA 278474..279823 (-) 1350 WP_049519744.1 Trk system potassium transporter TrkA -
  NYE79_RS01565 (NYE79_01565) - 280223..280726 (+) 504 WP_044020211.1 tRNA (cytidine(34)-2'-O)-methyltransferase -

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39524.24 Da        Isoelectric Point: 4.7476

>NTDB_id=964594 NYE79_RS01545 WP_049519748.1 274935..276002(+) (amiE) [Streptococcus sp. FSL W8-0197]
MIKGKNVILTARDIVVEFDVRDKVLTAIRGVSLDLIEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIDYRGQDL
TALTSNKEWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIVKHQGKTAKEAKEMAIDYMNKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQNEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYTELKGDAFALRSDYAMQIDFEQKAPQFSVTDTHWAK
TWLLHENAPKVEKPGVIADLHDKIRDKMGFAHLED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=964594 NYE79_RS01545 WP_049519748.1 274935..276002(+) (amiE) [Streptococcus sp. FSL W8-0197]
ATGATAAAAGGAAAAAATGTAATTTTGACTGCTCGTGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTTCTGACGGC
TATCCGAGGAGTTTCTCTGGACCTGATCGAAGGAGAAGTTCTTGCCTTGGTAGGTGAGTCCGGTTCTGGTAAATCTGTTT
TAACAAAAACCTTTACAGGGATGTTGGAAGACAATGGACGTATTGCTCAAGGAAGCATCGACTATCGTGGACAAGACTTG
ACCGCTCTTACTTCTAACAAGGAATGGGAGAAGATTCGTGGTGCTAAAATTGCGACCATCTTCCAAGATCCTATGACAAG
TTTGGACCCAATCAATACAATCGGTAGCCAAATCACTGAAGTTATCGTTAAACACCAAGGGAAAACAGCTAAGGAAGCCA
AAGAGATGGCAATCGACTATATGAACAAGGTCGGAATCCCAGATGCTGAAAAACGTTTTGAAGAGTATCCTTTCCAATAT
TCTGGAGGGATGCGCCAACGTATCGTTATTGCGATTGCCCTTGCCTGTCGTCCAGATATCTTGATCTGTGACGAGCCAAC
AACGGCTCTTGATGTAACCATTCAAGCACAAATCATTGATTTGCTTAAAACTTTACAGAACGAGTACCACTTTACCATTA
TCTTTATCACCCATGACCTTGGTGTGGTAGCAAGTATTGCCGATAAGGTAGCGGTTATGTATGCTGGAGAAATTGTAGAA
TATGGAACTGTTGAGGAAGTTTTCTACGACCCACGTCATCCATATACTTGGAGTCTCTTGTCTAGCTTGCCTCAGCTTGC
TGATGATAAAGGGGAATTGTACTCTATCCCAGGAACACCACCGTCTCTTTATACTGAGTTGAAAGGTGATGCCTTTGCCC
TTCGTTCAGATTATGCGATGCAAATTGACTTTGAACAGAAAGCACCTCAGTTTTCAGTCACTGATACTCACTGGGCTAAG
ACTTGGTTGCTTCATGAGAATGCTCCTAAAGTTGAAAAACCTGGGGTCATCGCAGATTTGCATGACAAAATTCGTGATAA
AATGGGCTTTGCTCATCTAGAAGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.197

100

0.862

  amiE Streptococcus thermophilus LMG 18311

84.225

100

0.842

  amiE Streptococcus thermophilus LMD-9

84.225

100

0.842

  oppD Streptococcus mutans UA159

54.31

98.028

0.532


Multiple sequence alignment