Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   NYE79_RS01550 Genome accession   NZ_CP150168
Coordinates   276013..276942 (+) Length   309 a.a.
NCBI ID   WP_049519746.1    Uniprot ID   A0A3R9J1P4
Organism   Streptococcus sp. FSL W8-0197     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 271013..281942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS01535 (NYE79_01535) amiC 272504..274000 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  NYE79_RS01540 (NYE79_01540) amiD 274000..274926 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  NYE79_RS01545 (NYE79_01545) amiE 274935..276002 (+) 1068 WP_049519748.1 ABC transporter ATP-binding protein Regulator
  NYE79_RS01550 (NYE79_01550) amiF 276013..276942 (+) 930 WP_049519746.1 ATP-binding cassette domain-containing protein Regulator
  NYE79_RS01555 (NYE79_01555) - 277031..278470 (-) 1440 WP_049519745.1 TrkH family potassium uptake protein -
  NYE79_RS01560 (NYE79_01560) trkA 278474..279823 (-) 1350 WP_049519744.1 Trk system potassium transporter TrkA -
  NYE79_RS01565 (NYE79_01565) - 280223..280726 (+) 504 WP_044020211.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  NYE79_RS01570 (NYE79_01570) - 281139..281702 (+) 564 WP_216728818.1 ECF transporter S component -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35053.25 Da        Isoelectric Point: 7.0424

>NTDB_id=964595 NYE79_RS01550 WP_049519746.1 276013..276942(+) (amiF) [Streptococcus sp. FSL W8-0197]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAEVARYKKALKE

Nucleotide


Download         Length: 930 bp        

>NTDB_id=964595 NYE79_RS01550 WP_049519746.1 276013..276942(+) (amiF) [Streptococcus sp. FSL W8-0197]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGGGAAACTTTCTCTCTTGTAGGAGAGTCTGGTAGTGGGAAAACAACGATTGGTCGTG
CTATTATTGGTCTAAATAATACCAGTAAAGGTGAGATCATCTTTGATGGTCATAAGATCAATGGAAAAAAATCTCATAAG
GAATCCTCAGACTTGATCCGTCGTATCCAGATGATTTTCCAGGACCCTGCAGCCAGCTTGAATGAGCGTGCGACGGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTATCACTTGTTCAAAGACGAAGAAGATCGTAAAGAAAAGGTTCAAAAGATGA
TTCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTATCCACACGAGTTTTCTGGTGGTCAACGTCAGCGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTATCAGTGCGTGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGCTTGACCTATCTCTTTATCGCGCATGATTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCGGTTATCTATAAGGGAGTTATCGTCGAAGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCATCCATACACTCAAGCACTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGATAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCGGAAGTTGCTCGTTACAAGAAAGCTCTTAAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9J1P4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

86.23

98.706

0.851
  amiF Streptococcus thermophilus LMG 18311

85.246

98.706

0.841
  amiF Streptococcus thermophilus LMD-9

84.918

98.706

0.838

Multiple sequence alignment