Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   NYE79_RS01540 Genome accession   NZ_CP150168
Coordinates   274000..274926 (+) Length   308 a.a.
NCBI ID   WP_000103692.1    Uniprot ID   A0A081R278
Organism   Streptococcus sp. FSL W8-0197     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 269000..279926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS01530 (NYE79_01530) amiA 270458..272437 (+) 1980 WP_000749711.1 peptide ABC transporter substrate-binding protein Regulator
  NYE79_RS01535 (NYE79_01535) amiC 272504..274000 (+) 1497 WP_000759894.1 ABC transporter permease Regulator
  NYE79_RS01540 (NYE79_01540) amiD 274000..274926 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  NYE79_RS01545 (NYE79_01545) amiE 274935..276002 (+) 1068 WP_049519748.1 ABC transporter ATP-binding protein Regulator
  NYE79_RS01550 (NYE79_01550) amiF 276013..276942 (+) 930 WP_049519746.1 ATP-binding cassette domain-containing protein Regulator
  NYE79_RS01555 (NYE79_01555) - 277031..278470 (-) 1440 WP_049519745.1 TrkH family potassium uptake protein -
  NYE79_RS01560 (NYE79_01560) trkA 278474..279823 (-) 1350 WP_049519744.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34667.68 Da        Isoelectric Point: 9.0162

>NTDB_id=964593 NYE79_RS01540 WP_000103692.1 274000..274926(+) (amiD) [Streptococcus sp. FSL W8-0197]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVFMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=964593 NYE79_RS01540 WP_000103692.1 274000..274926(+) (amiD) [Streptococcus sp. FSL W8-0197]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCTCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACCGTCTTTATGCTAGGAATTTTGGTTGCTATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTCTCTGCTCGT
TTTATCAAGCCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGTGC
GCGTAACTCTATCCTCATCTCTGTAATTGCAACTTTTATCAACCTTGTAATTGGGGTTATTGTTGGTGGAATTTGGGGAA
TTTCAAAATCCGTTGACCGTGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATCGGTGCTGGTTTCTGGAATTTGATTTTTGCAATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATCGTTAAAAACATCATGCCACAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTATTCTGGATTCCGTTGACAACCTTGATCTTGGTATCCCTATCTCTTTTCGTTG
TTGGTCAAAATCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818

Multiple sequence alignment