Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   NYE79_RS01515 Genome accession   NZ_CP150168
Coordinates   267662..268486 (+) Length   274 a.a.
NCBI ID   WP_339293739.1    Uniprot ID   -
Organism   Streptococcus sp. FSL W8-0197     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 262662..273486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE79_RS01480 (NYE79_01480) asnA 262752..263744 (+) 993 WP_000747998.1 aspartate--ammonia ligase -
  NYE79_RS01485 (NYE79_01485) rsmD 263809..264348 (+) 540 WP_216728814.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NYE79_RS01490 (NYE79_01490) coaD 264338..264826 (+) 489 WP_216728815.1 pantetheine-phosphate adenylyltransferase -
  NYE79_RS01495 (NYE79_01495) sepM 264810..265847 (+) 1038 WP_000730772.1 SepM family pheromone-processing serine protease Regulator
  NYE79_RS01500 (NYE79_01500) - 265903..266133 (+) 231 WP_002892633.1 DUF1146 family protein -
  NYE79_RS01505 (NYE79_01505) murA 266157..267440 (+) 1284 WP_180833558.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NYE79_RS01510 (NYE79_01510) - 267427..267621 (+) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  NYE79_RS01515 (NYE79_01515) endA 267662..268486 (+) 825 WP_339293739.1 DNA/RNA non-specific endonuclease Machinery gene
  NYE79_RS01520 (NYE79_01520) - 268623..269954 (+) 1332 WP_339293740.1 hemolysin family protein -
  NYE79_RS01530 (NYE79_01530) amiA 270458..272437 (+) 1980 WP_000749711.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 30015.62 Da        Isoelectric Point: 9.8219

>NTDB_id=964590 NYE79_RS01515 WP_339293739.1 267662..268486(+) (endA) [Streptococcus sp. FSL W8-0197]
MDKKTRQALIGLLLFLLLTAGSYYIKQMQSAPNSPRTKVNQKKQASEAPSQELAESVLTESIKNQIKGNLEWNGAGAFVV
NGNKTNLDAKVSSKPYADNKTKTVGKETVPTVANAILSKATRQYKNREETGNGSTSWTPPGWHQVKNLKGAYTHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQAQAEDSTGQNYYESLVRKALDQNKRVRYRVTLHYATNEDLVPSASQIE
AKSSDGELEFNVLIPNVQKGIQLDYRTGQVTVTD

Nucleotide


Download         Length: 825 bp        

>NTDB_id=964590 NYE79_RS01515 WP_339293739.1 267662..268486(+) (endA) [Streptococcus sp. FSL W8-0197]
ATGGACAAAAAAACAAGACAAGCTCTGATAGGATTACTTCTATTCTTACTCTTGACTGCTGGAAGCTACTACATCAAGCA
GATGCAGTCAGCACCAAATAGCCCTAGAACCAAGGTTAATCAGAAAAAACAAGCTTCAGAAGCACCCAGTCAGGAGTTGG
CAGAAAGTGTCTTAACCGAGTCAATCAAAAACCAAATCAAGGGTAATCTCGAGTGGAATGGAGCAGGGGCCTTTGTTGTC
AATGGCAATAAAACCAATCTAGATGCCAAGGTTTCCAGCAAACCCTATGCGGATAATAAGACAAAGACAGTGGGAAAAGA
AACAGTCCCGACTGTTGCCAATGCCATCTTATCCAAAGCGACTCGGCAGTATAAGAATCGTGAAGAGACTGGAAATGGAT
CAACCTCTTGGACGCCACCAGGATGGCATCAGGTCAAGAATCTAAAGGGAGCCTACACACATGCAGTTGATAGAGGACAC
CTGCTGGGCTATGCCTTGATAGGTGGATTGGATGGTTTTGATGCCTCTACCAGCAATCCCAAGAACATTGCAGTTCAGAC
AGCTTGGGCAAACCAAGCACAGGCTGAGGATTCGACAGGCCAGAACTACTATGAGAGTCTAGTCAGAAAAGCCTTGGACC
AAAATAAGAGGGTCCGTTATCGCGTGACACTCCACTATGCGACAAATGAGGATCTAGTTCCATCCGCTTCACAAATTGAA
GCCAAATCTTCAGATGGCGAATTGGAGTTCAATGTCCTAATCCCCAATGTTCAAAAGGGAATCCAGCTTGACTATCGAAC
AGGTCAAGTGACAGTGACGGATTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(76-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

89.377

99.635

0.891
  endA Streptococcus pneumoniae D39

89.377

99.635

0.891
  endA Streptococcus pneumoniae R6

89.377

99.635

0.891
  endA Streptococcus pneumoniae TIGR4

89.377

99.635

0.891

Multiple sequence alignment