Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NYE66_RS06245 Genome accession   NZ_CP150167
Coordinates   1183296..1184540 (+) Length   414 a.a.
NCBI ID   WP_055358434.1    Uniprot ID   -
Organism   Geobacillus sp. FSL W8-0466     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1178296..1189540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE66_RS06220 (NYE66_06220) - 1179738..1180454 (+) 717 WP_033012192.1 SDR family oxidoreductase -
  NYE66_RS06225 (NYE66_06225) - 1180522..1180779 (+) 258 WP_055358544.1 DUF3243 domain-containing protein -
  NYE66_RS06230 (NYE66_06230) - 1180898..1181689 (+) 792 WP_055358433.1 DUF3388 domain-containing protein -
  NYE66_RS06235 (NYE66_06235) - 1181716..1182609 (+) 894 WP_049624707.1 RodZ domain-containing protein -
  NYE66_RS06240 (NYE66_06240) pgsA 1182690..1183268 (+) 579 WP_033016861.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NYE66_RS06245 (NYE66_06245) cinA 1183296..1184540 (+) 1245 WP_055358434.1 competence/damage-inducible protein A Machinery gene
  NYE66_RS06250 (NYE66_06250) - 1184718..1185005 (+) 288 Protein_1172 DNA recombination/repair protein RecA -
  NYE66_RS06255 (NYE66_06255) recA 1186301..1187116 (+) 816 WP_230847153.1 recombinase RecA Machinery gene
  NYE66_RS06260 (NYE66_06260) rny 1187549..1189101 (+) 1553 Protein_1174 ribonuclease Y -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45002.87 Da        Isoelectric Point: 7.0168

>NTDB_id=964549 NYE66_RS06245 WP_055358434.1 1183296..1184540(+) (cinA) [Geobacillus sp. FSL W8-0466]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAMFGINVYFHTVVGDNADRLEQAVKTAQTRANLIIFTGGLGPTKDDLTKET
IARLLGRRLVIDEEALRAIEVYFARTNRPMTENNKKQALVLEGSTVLKNEHGMAPGMALVADGITYMLLPGPPKEMRPMF
KKYGNAFLRRTFSLSERIESRVLRFFGIGESALETAIADLIDAQSNPTIAPLANDGEVTLRLTAKHRDQAKAKRLLDEAE
AAILTRVGRYCYGYNDETLFTKTLARLKERGWTIAAAESLTGGMFLEELTAVPGASAAVRGGVVCYTNGVKEHILGVPRP
LLETDGAVSEPCARLLAENVRTMCDADIGISFTGVAGPDPLEGHPPGTVYVGIAMRGRDTVVHRLTLSGTRDAIRIRTAK
YGCFFLLEMLAADC

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=964549 NYE66_RS06245 WP_055358434.1 1183296..1184540(+) (cinA) [Geobacillus sp. FSL W8-0466]
TTGAACGCGGAGATCATTGCTGTTGGCTCTGAGCTGTTGCTTGGGCAAATCGCCAATACGAACGCCCAGTTTTTGTCGCA
GCAGCTGGCGATGTTTGGCATTAACGTCTATTTCCATACCGTCGTCGGCGACAACGCCGACCGCCTTGAGCAGGCGGTGA
AAACGGCGCAAACGAGAGCGAACCTCATCATTTTCACCGGCGGCCTCGGCCCGACGAAAGACGATTTGACGAAGGAGACG
ATCGCCCGTTTGCTTGGCCGCCGGCTCGTGATCGACGAGGAAGCGCTCCGAGCGATTGAGGTGTATTTTGCCCGCACAAA
CCGGCCGATGACAGAAAACAATAAAAAGCAGGCGCTCGTCTTGGAAGGATCGACGGTGCTGAAAAACGAGCACGGCATGG
CGCCAGGGATGGCGCTTGTGGCAGACGGCATTACGTACATGCTGCTGCCCGGGCCGCCGAAAGAAATGCGGCCGATGTTC
AAAAAATACGGAAACGCCTTTTTGCGCCGTACGTTTTCGCTTTCCGAGCGCATCGAGTCGCGCGTGCTCCGCTTTTTTGG
CATCGGTGAATCAGCGCTCGAGACGGCGATCGCCGACTTGATCGACGCCCAGTCGAACCCGACGATCGCCCCGCTTGCAA
ACGACGGTGAGGTAACGCTCCGTCTGACGGCGAAACATCGGGATCAGGCGAAAGCCAAGCGGCTGCTCGACGAGGCGGAA
GCCGCCATTTTGACGCGCGTCGGCCGTTATTGTTACGGGTATAATGATGAAACGCTGTTTACAAAGACATTGGCACGGTT
AAAAGAAAGAGGATGGACAATCGCTGCAGCGGAAAGCTTGACTGGAGGCATGTTCCTTGAAGAGCTGACAGCTGTGCCGG
GGGCGTCGGCTGCTGTGCGCGGCGGCGTTGTCTGTTACACAAACGGCGTAAAAGAACACATCCTTGGCGTGCCGCGGCCG
CTGCTGGAGACGGACGGAGCGGTAAGCGAACCGTGCGCACGCCTGCTCGCTGAGAACGTGCGCACGATGTGCGATGCGGA
TATCGGCATCAGCTTCACCGGCGTCGCCGGCCCCGATCCGCTTGAGGGCCATCCGCCGGGCACCGTGTATGTCGGCATCG
CCATGCGCGGGCGCGACACCGTCGTCCACCGCCTCACCTTATCCGGCACGCGTGATGCCATTCGCATCCGCACCGCCAAA
TACGGCTGTTTTTTTCTGCTTGAGATGCTCGCGGCCGACTGCTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.169

98.792

0.585
  cinA Streptococcus mitis SK321

49.361

94.444

0.466
  cinA Streptococcus mitis NCTC 12261

48.492

96.135

0.466
  cinA Streptococcus pneumoniae TIGR4

48.492

96.135

0.466
  cinA Streptococcus pneumoniae Rx1

48.492

96.135

0.466
  cinA Streptococcus pneumoniae R6

48.492

96.135

0.466
  cinA Streptococcus pneumoniae D39

48.241

96.135

0.464
  cinA Streptococcus mutans UA159

47.368

96.377

0.457
  cinA Streptococcus suis isolate S10

42.593

91.304

0.389

Multiple sequence alignment