Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NSU02_RS11340 Genome accession   NZ_CP150165
Coordinates   2353147..2354406 (-) Length   419 a.a.
NCBI ID   WP_339192926.1    Uniprot ID   -
Organism   Aeribacillus sp. FSL W8-0870     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2348147..2359406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU02_RS11325 (NSU02_11325) - 2349285..2350079 (-) 795 WP_063386731.1 TIGR00282 family metallophosphoesterase -
  NSU02_RS11330 (NSU02_11330) rny 2350162..2351721 (-) 1560 WP_063386730.1 ribonuclease Y -
  NSU02_RS11335 (NSU02_11335) recA 2351970..2352980 (-) 1011 WP_063386751.1 recombinase RecA Machinery gene
  NSU02_RS11340 (NSU02_11340) cinA 2353147..2354406 (-) 1260 WP_339192926.1 competence/damage-inducible protein A Machinery gene
  NSU02_RS11345 (NSU02_11345) pgsA 2354425..2355003 (-) 579 WP_327862729.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NSU02_RS11350 (NSU02_11350) - 2355058..2355945 (-) 888 WP_094246010.1 RodZ domain-containing protein -
  NSU02_RS11355 (NSU02_11355) - 2355961..2356755 (-) 795 WP_066246441.1 YmfK family protein -
  NSU02_RS11360 (NSU02_11360) - 2356902..2357159 (-) 258 WP_063386726.1 DUF3243 domain-containing protein -
  NSU02_RS11365 (NSU02_11365) - 2357233..2357943 (-) 711 WP_063386725.1 SDR family oxidoreductase -
  NSU02_RS11370 (NSU02_11370) - 2357962..2359251 (-) 1290 WP_339192927.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46377.24 Da        Isoelectric Point: 6.5085

>NTDB_id=964468 NSU02_RS11340 WP_339192926.1 2353147..2354406(-) (cinA) [Aeribacillus sp. FSL W8-0870]
MNVNAEIIAVGSELLLGQIANTNAQFISRKLAEIGVNVFYHTVVGDNAERLEHAIETAKKRSNCIIFTGGLGPTKDDLTK
ETIARILNKRLVIDEAAMKNIEDFFKRTKRTMSENNRKQALVLEGSTVLPNHYGMAPGMALEANGIIYLLMPGVPKEMKP
MFINYGVPFLQYHYGLKEKIISRVLRFFGIGESQLETDIEDLIDQQTNPTIAPLAKDGEVTLRLTAKHEDESTALKLIDE
TEKKILSRVGRYFYGHGETSIQEQLMKLLKEKQYTISAAESLTGGLFSEQLTHFPGASNIVLGGIVCYTNEVKQHVLGVS
EETLKTKGAVSSECAKEMAENIKKLTGSNIGISFTGVAGPDPSEGKEVGTVYIGIQIDDRPTAVFELHLSGTREGIRHRT
ANYGCYYVMNVIKEMENRL

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=964468 NSU02_RS11340 WP_339192926.1 2353147..2354406(-) (cinA) [Aeribacillus sp. FSL W8-0870]
ATGAATGTAAATGCTGAAATTATTGCTGTCGGTTCAGAACTGTTGCTTGGACAGATCGCCAACACAAACGCCCAATTTAT
ATCAAGAAAGCTTGCCGAAATAGGTGTTAATGTTTTTTATCATACGGTCGTTGGAGACAATGCTGAGAGGCTAGAGCATG
CGATCGAAACGGCAAAAAAACGGTCGAATTGCATCATTTTTACCGGCGGGCTCGGCCCGACAAAAGATGATTTGACGAAA
GAAACGATTGCACGTATTTTGAATAAACGTCTCGTGATCGACGAGGCGGCGATGAAAAACATTGAGGATTTTTTTAAACG
GACGAAACGGACAATGTCGGAAAACAATCGGAAACAAGCATTAGTTTTGGAAGGTTCTACTGTTTTGCCAAATCATTACG
GAATGGCGCCAGGAATGGCGTTAGAGGCGAACGGAATTATATATTTGCTCATGCCGGGTGTTCCGAAAGAAATGAAGCCG
ATGTTTATCAACTACGGTGTGCCGTTTTTGCAATATCATTACGGGTTAAAAGAAAAAATCATCTCGCGTGTGCTTCGTTT
CTTTGGCATCGGCGAATCTCAGCTTGAAACAGATATAGAGGATCTGATTGATCAGCAAACAAATCCGACCATCGCGCCGC
TGGCAAAAGACGGCGAAGTAACATTGCGCCTGACAGCAAAACATGAAGATGAGTCGACTGCGCTGAAGCTGATTGACGAA
ACAGAAAAAAAGATTTTAAGCCGTGTTGGCCGATATTTTTATGGACACGGTGAAACTTCGATCCAAGAGCAGCTTATGAA
GCTTCTAAAAGAAAAGCAATATACTATTTCGGCTGCAGAAAGTTTGACGGGCGGTCTTTTTTCCGAACAGCTGACCCATT
TTCCAGGCGCTTCGAATATTGTGCTTGGAGGAATTGTCTGCTATACAAACGAAGTGAAGCAGCATGTTCTTGGCGTGTCG
GAAGAAACGTTGAAAACAAAAGGAGCCGTTAGCTCTGAATGTGCGAAAGAAATGGCGGAAAATATAAAAAAATTGACCGG
CAGCAATATCGGCATCAGCTTTACGGGAGTGGCAGGACCTGATCCTTCTGAAGGAAAAGAAGTTGGGACTGTCTATATCG
GTATTCAAATCGACGATCGGCCGACGGCAGTCTTTGAGCTTCATCTTTCCGGTACTCGGGAAGGGATCAGGCACAGAACG
GCAAATTATGGCTGCTACTATGTAATGAATGTAATAAAGGAAATGGAAAACCGGTTATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Probable molybdopterin binding domain (MoCF_biosynth)

(7-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

64.39

97.852

0.63
  cinA Streptococcus mitis SK321

47.783

96.897

0.463
  cinA Streptococcus pneumoniae TIGR4

47.537

96.897

0.461
  cinA Streptococcus mitis NCTC 12261

47.291

96.897

0.458
  cinA Streptococcus pneumoniae Rx1

47.291

96.897

0.458
  cinA Streptococcus pneumoniae R6

47.291

96.897

0.458
  cinA Streptococcus pneumoniae D39

47.044

96.897

0.456
  cinA Streptococcus mutans UA159

45.913

99.284

0.456
  cinA Streptococcus suis isolate S10

41.867

89.499

0.375

Multiple sequence alignment