Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WKW49_RS13245 Genome accession   NZ_CP149819
Coordinates   3358195..3359409 (+) Length   404 a.a.
NCBI ID   WP_339074027.1    Uniprot ID   -
Organism   Teredinibacter turnerae strain SR02026     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3353195..3364409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKW49_RS13220 (WKW49_13220) - 3353234..3353767 (+) 534 WP_018015269.1 TIGR02281 family clan AA aspartic protease -
  WKW49_RS13225 (WKW49_13225) nadC 3353781..3354623 (+) 843 WP_339074026.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WKW49_RS13230 (WKW49_13230) - 3354689..3355429 (-) 741 WP_143876291.1 hypothetical protein -
  WKW49_RS13235 (WKW49_13235) - 3355565..3356065 (-) 501 WP_015818399.1 pilin -
  WKW49_RS13240 (WKW49_13240) pilB 3356464..3358191 (+) 1728 WP_015818976.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WKW49_RS13245 (WKW49_13245) pilC 3358195..3359409 (+) 1215 WP_339074027.1 type II secretion system F family protein Machinery gene
  WKW49_RS13250 (WKW49_13250) - 3359410..3360294 (+) 885 WP_339074028.1 A24 family peptidase -
  WKW49_RS13255 (WKW49_13255) coaE 3360294..3360902 (+) 609 WP_339074029.1 dephospho-CoA kinase -
  WKW49_RS13260 (WKW49_13260) yacG 3360892..3361092 (+) 201 WP_026160581.1 DNA gyrase inhibitor YacG -
  WKW49_RS13265 (WKW49_13265) - 3361086..3362045 (-) 960 WP_339074030.1 Nudix family hydrolase -
  WKW49_RS13270 (WKW49_13270) argJ 3362026..3363243 (-) 1218 WP_339074031.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43383.00 Da        Isoelectric Point: 9.7066

>NTDB_id=961716 WKW49_RS13245 WP_339074027.1 3358195..3359409(+) (pilC) [Teredinibacter turnerae strain SR02026]
MATASSELFVYKGVDKRGNKVSGEVSSQSSTMAKAQLLKQGIRANTVRKKPKALFGAGKKPIKPMDIALFTRQMATMMKA
GVPLVQSFDIVAGGADNKTLAELILDIKEDVAAGGGFAASLRKRPKYFDDLFCNLVESGEQSGALETMLDRIATYKEKTE
QLKAKIKKAMTYPIAVVVVAVVVTGVLLVKVVPQFAETFSSFGANLPAFTLFVLHLSNLAQEYWLVVLASIIGAVVLFGK
LKQRSKAVRDSLDKLILRVPVVGNIVYQSIIARFARTLSTTFAAGVPLIDALSSVAGATGNSIYESAVLRIREEVSTGTQ
LNVAINSTKVFPPMLVQMTTIGEESGALDEMLDKVANYYEEAVDNLVDSLTSLLEPMIMAVLGVLVGGLMVAMYLPIFQL
GSVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=961716 WKW49_RS13245 WP_339074027.1 3358195..3359409(+) (pilC) [Teredinibacter turnerae strain SR02026]
ATGGCAACCGCAAGCTCCGAGCTTTTTGTATATAAAGGAGTCGATAAACGAGGGAATAAGGTCAGTGGCGAGGTCTCAAG
TCAGAGCAGCACTATGGCTAAGGCACAACTACTGAAGCAAGGGATCAGGGCAAACACAGTACGTAAAAAACCGAAAGCAT
TGTTCGGCGCAGGTAAAAAGCCTATCAAGCCTATGGATATCGCGCTTTTTACGCGTCAAATGGCAACAATGATGAAAGCG
GGCGTACCCCTGGTACAAAGCTTTGACATTGTTGCGGGAGGCGCAGACAACAAAACGCTTGCTGAACTGATTTTAGATAT
CAAGGAAGATGTAGCCGCCGGCGGTGGCTTTGCAGCCTCACTAAGAAAAAGACCCAAATATTTTGATGACCTATTTTGCA
ATTTAGTTGAGTCGGGCGAGCAGTCCGGTGCGCTGGAAACTATGCTTGATCGAATTGCCACATACAAAGAAAAGACCGAG
CAATTAAAAGCCAAAATTAAAAAAGCAATGACCTACCCAATCGCGGTTGTCGTCGTGGCAGTTGTGGTGACCGGAGTACT
ACTGGTAAAGGTCGTCCCGCAATTTGCTGAAACATTCAGTAGTTTCGGAGCAAACTTACCTGCTTTCACACTTTTTGTTC
TGCACCTGTCCAATTTAGCTCAAGAGTATTGGTTAGTAGTCTTAGCTTCAATCATTGGTGCCGTTGTACTGTTTGGCAAA
CTCAAACAGAGAAGCAAAGCTGTGAGAGATTCGCTAGATAAACTAATTTTACGCGTGCCGGTGGTGGGCAACATTGTTTA
TCAATCAATCATTGCCAGATTCGCCAGAACACTATCCACAACCTTTGCTGCGGGCGTGCCGCTTATAGATGCTTTGTCCT
CTGTAGCCGGAGCTACTGGAAATTCGATCTATGAATCTGCGGTACTCCGTATTCGAGAAGAAGTATCTACGGGGACGCAA
TTGAATGTGGCAATAAATAGTACAAAGGTTTTTCCTCCCATGCTCGTTCAGATGACCACAATAGGAGAGGAGTCTGGAGC
GCTAGACGAAATGCTGGATAAGGTCGCCAACTACTACGAAGAAGCCGTCGATAACCTTGTAGATAGCTTGACCTCCTTAC
TAGAACCAATGATTATGGCTGTACTTGGCGTTCTGGTCGGTGGATTGATGGTTGCCATGTACCTACCAATTTTCCAATTA
GGATCCGTTGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.664

98.762

0.649
  pilC Acinetobacter baylyi ADP1

61.055

98.515

0.601
  pilC Acinetobacter baumannii D1279779

59.95

98.267

0.589
  pilC Legionella pneumophila strain ERS1305867

55.556

98.02

0.545
  pilG Neisseria meningitidis 44/76-A

43.325

98.267

0.426
  pilG Neisseria gonorrhoeae MS11

43.325

98.267

0.426
  pilC Vibrio cholerae strain A1552

40.657

98.02

0.399
  pilC Vibrio campbellii strain DS40M4

38.67

100

0.389