Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WKI14_RS13645 Genome accession   NZ_CP149818
Coordinates   3467271..3468485 (+) Length   404 a.a.
NCBI ID   WP_339065244.1    Uniprot ID   -
Organism   Teredinibacter turnerae strain SR01903     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3462271..3473485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI14_RS13620 (WKI14_13620) - 3462324..3462857 (+) 534 WP_018015269.1 TIGR02281 family clan AA aspartic protease -
  WKI14_RS13625 (WKI14_13625) nadC 3462871..3463713 (+) 843 WP_339065240.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WKI14_RS13630 (WKI14_13630) - 3463765..3464505 (-) 741 WP_339065241.1 hypothetical protein -
  WKI14_RS13635 (WKI14_13635) - 3464641..3465141 (-) 501 WP_015818399.1 pilin -
  WKI14_RS13640 (WKI14_13640) pilB 3465540..3467267 (+) 1728 WP_015818976.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WKI14_RS13645 (WKI14_13645) pilC 3467271..3468485 (+) 1215 WP_339065244.1 type II secretion system F family protein Machinery gene
  WKI14_RS13650 (WKI14_13650) - 3468486..3469370 (+) 885 WP_339065246.1 A24 family peptidase -
  WKI14_RS13655 (WKI14_13655) coaE 3469370..3469978 (+) 609 WP_339065247.1 dephospho-CoA kinase -
  WKI14_RS13660 (WKI14_13660) yacG 3469968..3470168 (+) 201 WP_026160581.1 DNA gyrase inhibitor YacG -
  WKI14_RS13665 (WKI14_13665) - 3470162..3471121 (-) 960 WP_339065250.1 Nudix family hydrolase -
  WKI14_RS13670 (WKI14_13670) argJ 3471102..3472319 (-) 1218 WP_339065253.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43368.97 Da        Isoelectric Point: 9.7066

>NTDB_id=961694 WKI14_RS13645 WP_339065244.1 3467271..3468485(+) (pilC) [Teredinibacter turnerae strain SR01903]
MATASSELFVYKGVDKRGNKVSGEVSSQSSTMAKAQLLKQGIRANTVRKKPKALFGAGKKPIKPMDIALFTRQMATMMKA
GVPLVQSFDIVAGGADNKTLAELILDIKEDVAAGGGFAASLRKRPKYFDDLFCNLVESGEQSGALETMLDRIATYKEKTE
QLKAKIKKAMTYPIAVVVVAVVVTGVLLVKVVPQFAETFSSFGANLPAFTLFVLHLSNLAQDYWLVVLASIIGAVVLFGK
LKQRSKAVRDSLDKLILRVPVVGNIVYQSIIARFARTLSTTFAAGVPLIDALSSVAGATGNSIYESAVLRIREEVSTGTQ
LNVAINSTKVFPPMLVQMTTIGEESGALDEMLDKVANYYEEAVDNLVDSLTSLLEPMIMAVLGVLVGGLMVAMYLPIFQL
GSVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=961694 WKI14_RS13645 WP_339065244.1 3467271..3468485(+) (pilC) [Teredinibacter turnerae strain SR01903]
ATGGCAACCGCAAGCTCCGAGCTTTTTGTATATAAAGGAGTCGATAAACGAGGGAATAAGGTCAGTGGCGAGGTCTCAAG
TCAGAGCAGCACTATGGCTAAGGCACAACTACTGAAGCAAGGGATCAGGGCAAACACAGTACGTAAAAAACCGAAAGCAT
TGTTCGGCGCAGGTAAAAAGCCTATCAAGCCTATGGATATAGCGCTTTTTACGCGTCAAATGGCAACAATGATGAAAGCG
GGCGTACCCCTGGTACAAAGCTTTGACATTGTTGCGGGAGGCGCAGACAACAAAACGCTTGCTGAACTGATTTTAGATAT
CAAGGAAGATGTAGCCGCCGGCGGTGGCTTTGCAGCCTCACTAAGAAAAAGACCCAAATATTTTGATGACCTATTTTGCA
ATTTAGTTGAGTCGGGCGAGCAGTCCGGTGCGCTGGAAACTATGCTTGATCGAATTGCCACATACAAAGAAAAGACCGAG
CAATTAAAAGCCAAAATTAAAAAAGCAATGACCTACCCAATCGCGGTTGTCGTCGTAGCAGTTGTGGTGACCGGAGTACT
ACTGGTAAAGGTCGTCCCGCAATTTGCTGAAACATTCAGTAGTTTCGGAGCAAACTTACCTGCTTTCACACTTTTTGTTC
TGCACCTGTCCAATTTAGCTCAAGATTATTGGTTAGTAGTCTTAGCTTCAATCATTGGCGCCGTTGTATTGTTTGGCAAA
CTCAAACAGAGAAGCAAAGCCGTGAGAGATTCGCTAGATAAACTAATTTTACGCGTGCCGGTGGTGGGCAACATTGTTTA
TCAATCAATCATTGCCAGATTCGCCAGAACACTATCCACAACCTTTGCTGCGGGCGTGCCGCTTATAGATGCTTTGTCCT
CTGTAGCCGGAGCTACTGGAAATTCGATCTATGAATCTGCGGTACTCCGTATTCGAGAAGAAGTATCTACGGGGACGCAA
TTGAATGTGGCAATAAATAGTACAAAGGTTTTTCCTCCCATGCTCGTCCAGATGACCACAATAGGAGAGGAGTCTGGAGC
GCTAGACGAAATGCTGGATAAGGTCGCCAACTACTACGAAGAAGCCGTCGATAACCTTGTAGATAGCTTGACCTCCTTAC
TAGAACCAATGATTATGGCTGTACTTGGCGTTCTGGTCGGTGGATTGATGGTTGCCATGTACCTACCAATTTTCCAATTA
GGATCCGTTGTTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.664

98.762

0.649
  pilC Acinetobacter baylyi ADP1

61.307

98.515

0.604
  pilC Acinetobacter baumannii D1279779

59.698

98.267

0.587
  pilC Legionella pneumophila strain ERS1305867

55.556

98.02

0.545
  pilG Neisseria meningitidis 44/76-A

43.325

98.267

0.426
  pilG Neisseria gonorrhoeae MS11

43.325

98.267

0.426
  pilC Vibrio cholerae strain A1552

40.657

98.02

0.399
  pilC Vibrio campbellii strain DS40M4

38.67

100

0.389