Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   V8N34_RS00385 Genome accession   NZ_CP149804
Coordinates   64699..65880 (+) Length   393 a.a.
NCBI ID   WP_172060539.1    Uniprot ID   A0AAJ2PHN9
Organism   Streptococcus suis strain YA     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 59699..70880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8N34_RS00360 (V8N34_00360) mutL 60053..61990 (+) 1938 WP_172060540.1 DNA mismatch repair endonuclease MutL -
  V8N34_RS00365 (V8N34_00365) ruvA 62029..62619 (+) 591 WP_024403269.1 Holliday junction branch migration protein RuvA -
  V8N34_RS00370 (V8N34_00370) - 62873..63433 (+) 561 WP_172041687.1 DNA-3-methyladenine glycosylase I -
  V8N34_RS00375 (V8N34_00375) - 63507..63917 (+) 411 WP_024403267.1 helix-turn-helix transcriptional regulator -
  V8N34_RS00380 (V8N34_00380) - 63890..64555 (+) 666 WP_024403266.1 type II CAAX endopeptidase family protein -
  V8N34_RS00385 (V8N34_00385) cinA 64699..65880 (+) 1182 WP_172060539.1 competence/damage-inducible protein A Machinery gene
  V8N34_RS00390 (V8N34_00390) recA 65932..67083 (+) 1152 WP_044692568.1 recombinase RecA Machinery gene
  V8N34_RS00395 (V8N34_00395) spx 67319..67717 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  V8N34_RS00400 (V8N34_00400) - 67817..68083 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  V8N34_RS00405 (V8N34_00405) ruvX 68083..68502 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  V8N34_RS00410 (V8N34_00410) - 68514..68834 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  V8N34_RS00415 (V8N34_00415) - 69041..69619 (+) 579 WP_044668626.1 nucleotidyltransferase family protein -
  V8N34_RS00420 (V8N34_00420) rpsJ 70291..70599 (+) 309 WP_002939332.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43043.98 Da        Isoelectric Point: 4.3670

>NTDB_id=961479 V8N34_RS00385 WP_172060539.1 64699..65880(+) (cinA) [Streptococcus suis strain YA]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDIYFHTAVGDNEQRLLSVLEVARQRSDLVILCGGLGPTEDDLTKQI
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRILRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEED
ILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGWLSEEA
DCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=961479 V8N34_RS00385 WP_172060539.1 64699..65880(+) (cinA) [Streptococcus suis strain YA]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATCGTTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATATCTATTTCCACACAGCTGTTGGAGATAATGAACAGAGGCTTCTGTCTGTACTGG
AAGTAGCCCGTCAGCGGAGCGACCTGGTCATTCTCTGTGGAGGATTGGGTCCAACTGAGGATGACTTGACCAAGCAGATC
CTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTATCCTACGTTTTTTTGGCATTGG
TGAAAGCCAGTTGGTGACTGTTTTGGCGGACTTGATCGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTAACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAAGCAAATCTACGTTTAAATCAGTTGGAAGAAGAC
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGCCTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCTGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTAGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATATCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

96.183

100

0.962
  cinA Streptococcus mutans UA159

56.448

100

0.59
  cinA Streptococcus pneumoniae R6

55.529

100

0.588
  cinA Streptococcus mitis SK321

55.529

100

0.588
  cinA Streptococcus pneumoniae TIGR4

55.529

100

0.588
  cinA Streptococcus pneumoniae Rx1

55.529

100

0.588
  cinA Streptococcus mitis NCTC 12261

55.288

100

0.585
  cinA Streptococcus pneumoniae D39

55.288

100

0.585
  cinA Bacillus subtilis subsp. subtilis str. 168

40.409

99.491

0.402