Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WJ038_RS12045 Genome accession   NZ_CP149505
Coordinates   2632482..2633705 (+) Length   407 a.a.
NCBI ID   WP_029804706.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain EB101     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2627482..2638705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ038_RS12025 (WJ038_12075) ampD 2628524..2629075 (-) 552 WP_005479703.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  WJ038_RS12030 (WJ038_12080) nadC 2629168..2630055 (+) 888 WP_025523107.1 carboxylating nicotinate-nucleotide diphosphorylase -
  WJ038_RS12035 (WJ038_12085) - 2630319..2630771 (+) 453 WP_029846089.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WJ038_RS12040 (WJ038_12090) pilB 2630773..2632458 (+) 1686 WP_029804705.1 type IV-A pilus assembly ATPase PilB Machinery gene
  WJ038_RS12045 (WJ038_12095) pilC 2632482..2633705 (+) 1224 WP_029804706.1 type II secretion system F family protein Machinery gene
  WJ038_RS12050 (WJ038_12100) pilD 2633770..2634639 (+) 870 WP_025501249.1 A24 family peptidase Machinery gene
  WJ038_RS12055 (WJ038_12105) coaE 2634640..2635254 (+) 615 WP_005480887.1 dephospho-CoA kinase -
  WJ038_RS12060 (WJ038_12110) zapD 2635282..2636022 (+) 741 WP_023624252.1 cell division protein ZapD -
  WJ038_RS12065 (WJ038_12115) yacG 2636091..2636285 (+) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  WJ038_RS12070 (WJ038_12120) rplS 2636700..2637053 (-) 354 WP_005462554.1 50S ribosomal protein L19 -
  WJ038_RS12075 (WJ038_12125) trmD 2637095..2637838 (-) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  WJ038_RS12080 (WJ038_12130) rimM 2637866..2638414 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  WJ038_RS12085 (WJ038_12135) rpsP 2638443..2638691 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45236.45 Da        Isoelectric Point: 10.3852

>NTDB_id=959751 WJ038_RS12045 WP_029804706.1 2632482..2633705(+) (pilC) [Vibrio parahaemolyticus strain EB101]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSICVFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=959751 WJ038_RS12045 WP_029804706.1 2632482..2633705(+) (pilC) [Vibrio parahaemolyticus strain EB101]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAGGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTA
GTAACCGGTGTGCCGCTAGTACAAGCATTAAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCTGTGTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACAAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCCGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.749

100

0.857
  pilC Vibrio cholerae strain A1552

74.321

99.509

0.74
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilC Legionella pneumophila strain ERS1305867

40.342

100

0.405
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398