Detailed information NTG0959752

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WJ038_RS12050
• Genome accession: NZ_CP149505
• Coordinates: 2633770..2634639 (+)
• Length: 289 a.a.
• NCBI ID: WP_025501249.1
• Uniprot ID: A0AA46L6W6
• Organism: Vibrio parahaemolyticus strain EB101
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2628770..2639639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WJ038_RS12030 (WJ038_12080)	nadC	2629168..2630055 (+)	888	WP_025523107.1	carboxylating nicotinate-nucleotide diphosphorylase	-
WJ038_RS12035 (WJ038_12085)	-	2630319..2630771 (+)	453	WP_029846089.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
WJ038_RS12040 (WJ038_12090)	pilB	2630773..2632458 (+)	1686	WP_029804705.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WJ038_RS12045 (WJ038_12095)	pilC	2632482..2633705 (+)	1224	WP_029804706.1	type II secretion system F family protein	Machinery gene
WJ038_RS12050 (WJ038_12100)	pilD	2633770..2634639 (+)	870	WP_025501249.1	A24 family peptidase	Machinery gene
WJ038_RS12055 (WJ038_12105)	coaE	2634640..2635254 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
WJ038_RS12060 (WJ038_12110)	zapD	2635282..2636022 (+)	741	WP_023624252.1	cell division protein ZapD	-
WJ038_RS12065 (WJ038_12115)	yacG	2636091..2636285 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
WJ038_RS12070 (WJ038_12120)	rplS	2636700..2637053 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
WJ038_RS12075 (WJ038_12125)	trmD	2637095..2637838 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
WJ038_RS12080 (WJ038_12130)	rimM	2637866..2638414 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
WJ038_RS12085 (WJ038_12135)	rpsP	2638443..2638691 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32377.47 Da
• Isoelectric Point: 7.1970

>NTDB_id=959752 WJ038_RS12050 WP_025501249.1 2633770..2634639(+) (pilD) [Vibrio parahaemolyticus strain EB101]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=959752 WJ038_RS12050 WP_025501249.1 2633770..2634639(+) (pilD) [Vibrio parahaemolyticus strain EB101]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATTATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.619	100	0.896
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446