Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   WJ054_RS00795 Genome accession   NZ_CP149485
Coordinates   128729..129055 (+) Length   108 a.a.
NCBI ID   WP_084916953.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain STG643     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 123729..134055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ054_RS00780 (WJ054_00780) - 126373..126738 (+) 366 WP_003055257.1 DUF1033 family protein -
  WJ054_RS00785 (WJ054_00785) comGA/cglA 126819..127760 (+) 942 WP_014611930.1 competence type IV pilus ATPase ComGA Machinery gene
  WJ054_RS00790 (WJ054_00790) comYB 127696..128727 (+) 1032 WP_084916952.1 competence type IV pilus assembly protein ComGB Machinery gene
  WJ054_RS00795 (WJ054_00795) comYC 128729..129055 (+) 327 WP_084916953.1 competence type IV pilus major pilin ComGC Machinery gene
  WJ054_RS00800 (WJ054_00800) comGD 129030..129458 (+) 429 WP_257638821.1 competence type IV pilus minor pilin ComGD -
  WJ054_RS00805 (WJ054_00805) comGE 129466..129711 (+) 246 WP_049519695.1 competence type IV pilus minor pilin ComGE -
  WJ054_RS00810 (WJ054_00810) comGF 129692..130132 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF -
  WJ054_RS00815 (WJ054_00815) comGG 130155..130484 (+) 330 WP_003058539.1 competence type IV pilus minor pilin ComGG -
  WJ054_RS00820 (WJ054_00820) comYH 130547..131500 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  WJ054_RS00825 (WJ054_00825) - 131559..132755 (+) 1197 WP_084916957.1 acetate kinase -
  WJ054_RS00830 (WJ054_00830) - 133063..133269 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  WJ054_RS00835 (WJ054_00835) - 133372..134052 (+) 681 WP_003060329.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12439.42 Da        Isoelectric Point: 9.2972

>NTDB_id=959353 WJ054_RS00795 WP_084916953.1 128729..129055(+) (comYC) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLQQLKD
DGSITDKQVKAYTDYYGKHRDETQKLQP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=959353 WJ054_RS00795 WP_084916953.1 128729..129055(+) (comYC) [Streptococcus dysgalactiae subsp. equisimilis strain STG643]
ATGAAAAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTACTGGTGATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTACCTAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTACGAATTATCGCAAGGATCAAAACCAAGTTTACAACAGTTGAAAGAC
GATGGCAGTATTACAGATAAACAGGTAAAAGCTTACACAGACTATTATGGAAAACACAGAGATGAAACTCAAAAACTACA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

58.095

97.222

0.565
  comGC/cglC Streptococcus mitis SK321

52.83

98.148

0.519
  comGC/cglC Streptococcus pneumoniae D39

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae R6

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae Rx1

51.887

98.148

0.509
  comGC/cglC Streptococcus pneumoniae TIGR4

51.402

99.074

0.509
  comGC Lactococcus lactis subsp. cremoris KW2

53.398

95.37

0.509
  comGC/cglC Streptococcus mitis NCTC 12261

55.102

90.741

0.5
  comYC Streptococcus mutans UA140

52.475

93.519

0.491
  comYC Streptococcus mutans UA159

52.475

93.519

0.491
  comYC Streptococcus suis isolate S10

50.562

82.407

0.417