Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   ACI3L8_RS02690 Genome accession   NZ_CP173391
Coordinates   620560..621186 (-) Length   208 a.a.
NCBI ID   WP_005430931.1    Uniprot ID   A0ABQ5Y6E9
Organism   Vibrio campbellii strain LB3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 615560..626186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS02675 (ACI3L8_02675) - 616262..616534 (-) 273 WP_005430934.1 HU family DNA-binding protein -
  ACI3L8_RS02680 (ACI3L8_02680) lon 616726..619077 (-) 2352 WP_005529911.1 endopeptidase La -
  ACI3L8_RS02685 (ACI3L8_02685) clpX 619208..620488 (-) 1281 WP_005430932.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ACI3L8_RS02690 (ACI3L8_02690) clpP 620560..621186 (-) 627 WP_005430931.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACI3L8_RS02695 (ACI3L8_02695) tig 621293..622597 (-) 1305 WP_045370540.1 trigger factor -
  ACI3L8_RS02700 (ACI3L8_02700) - 623122..624927 (+) 1806 WP_404971849.1 ATP-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22979.25 Da        Isoelectric Point: 4.7297

>NTDB_id=958641 ACI3L8_RS02690 WP_005430931.1 620560..621186(-) (clpP) [Vibrio campbellii strain LB3]
MSYQEKNAMSPIIDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP
GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK
QKLNNLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGIVDAVLSHRGE

Nucleotide


Download         Length: 627 bp        

>NTDB_id=958641 ACI3L8_RS02690 WP_005430931.1 620560..621186(-) (clpP) [Vibrio campbellii strain LB3]
ATGAGCTACCAAGAAAAAAACGCAATGTCGCCAATTATTGACGCGCTAGTGCCAATGGTGGTTGAACAAACTTCCCGCGG
CGAACGCTCTTACGACATTTACTCACGTCTGCTTAAAGAGCGCGTGATCTTTTTAACTGGTCAAGTGGAAGACCACATGG
CAAACCTTGTCGTGGCTCAACTACTTTTCCTAGAATCTGAAAATCCAGATAAAGATATTTTCCTATACATCAACTCACCA
GGCGGCAGCGTAACAGCAGGTATGTCTATCTACGACACCATGCAGTTCATCAAGCCAAATGTAAGCACAGTATGTATGGG
TCAAGCTTGCTCTATGGGTGCGTTCCTGCTTGCAGGTGGTGCGCCAGGTAAGCGTTACGTTCTGCCTAATTCACGTGTGA
TGATCCACCAACCACTAGGTGGCTTCCAAGGTCAAGCTTCTGATATCCAAATCCATGCTCAGGAAATCCTGACCATCAAG
CAGAAGCTAAACAACCTATTAGCAGAACATACTGGCCAGCCTCTTGAAGTGATTGAGCGCGATACCGATCGTGACAACTT
CATGTCGGCAGATCAGGCAGTAGAATACGGTATTGTGGATGCAGTGTTGAGCCACCGCGGCGAGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.947

91.346

0.63
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.83

90.385

0.577
  clpP Streptococcus pneumoniae Rx1

53.646

92.308

0.495
  clpP Streptococcus pneumoniae D39

53.646

92.308

0.495
  clpP Streptococcus pneumoniae R6

53.646

92.308

0.495
  clpP Streptococcus pneumoniae TIGR4

53.646

92.308

0.495
  clpP Streptococcus thermophilus LMG 18311

52.083

92.308

0.481
  clpP Streptococcus thermophilus LMD-9

52.083

92.308

0.481
  clpP Lactococcus lactis subsp. cremoris KW2

52.083

92.308

0.481
  clpP Streptococcus mutans UA159

51.295

92.788

0.476
  clpP Streptococcus pyogenes JRS4

51.042

92.308

0.471
  clpP Streptococcus pyogenes MGAS315

51.042

92.308

0.471
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.521

92.308

0.466